File Changes for hiram

v243_base to v244_preview (2010-11-02 to 2010-11-16) v244

• src/hg/makeDb/doc/hg19Patch2.txt
  • lines changed 14, context: html, text, full: html, text
    fixup altSeqLiftOverPsl table to be proper psl
• src/hg/makeDb/schema/all.joiner
  • lines changed 1, context: html, text, full: html, text
    adding metaDb to the tables ignored
  • lines changed 17, context: html, text, full: html, text
    adding hg19ContigDiff and ignoring metaDb
  • lines changed 9, context: html, text, full: html, text
    fixing rule for wgEncodeGencodeYalePseudoV4 and adding hg19Patch2 ext seqFile checks and altSeq table ignores for hg19
  • lines changed 5, context: html, text, full: html, text
    adding identifier hg18ContigDiff
• src/hg/makeDb/schema/joiner.doc
  • lines changed 1, context: html, text, full: html, text
    add note about dupeOk only on primary key
• src/hg/makeDb/trackDb/README
  • lines changed 7, context: html, text, full: html, text
    add information about itemRgb
  • lines changed 9, context: html, text, full: html, text
    add note about how to load a bigBed file
• src/hg/makeDb/trackDb/human/hg19/trackDb.ra
  • lines changed 1, context: html, text, full: html, text
    improved regex for ctgPos2 search
  • lines changed 2, context: html, text, full: html, text
    termRegex fixup for ctgPos2
• src/hg/makeDb/trackDb/makefile
  • lines changed 4, context: html, text, full: html, text
    EXTRA should be on all loadTracks commands
• src/hg/makeDb/trackDb/worm/bruMal1/description.html
  • lines changed 1, context: html, text, full: html, text
    fixup copy and paste name errors from H. contortus to specific organism
• src/hg/makeDb/trackDb/worm/melHap1/description.html
  • lines changed 1, context: html, text, full: html, text
    fixup copy and paste name errors from H. contortus to specific organism
• src/product/scripts/updateHtml.sh
  • lines changed 1, context: html, text, full: html, text
    it is OK to rsync the js directory now, it is clean