Commits for hiram

v243_base to v244_preview (2010-11-02 to 2010-11-16) v244

• adding metaDb to the tables ignored
  • src/hg/makeDb/schema/all.joiner - lines changed 1, context: html, text, full: html, text
• adding hg19ContigDiff and ignoring metaDb
  • src/hg/makeDb/schema/all.joiner - lines changed 17, context: html, text, full: html, text
• add note about dupeOk only on primary key
  • src/hg/makeDb/schema/joiner.doc - lines changed 1, context: html, text, full: html, text
• fixup altSeqLiftOverPsl table to be proper psl
  • src/hg/makeDb/doc/hg19Patch2.txt - lines changed 14, context: html, text, full: html, text
• fixing rule for wgEncodeGencodeYalePseudoV4 and adding hg19Patch2 ext seqFile checks and altSeq table ignores for hg19
  • src/hg/makeDb/schema/all.joiner - lines changed 9, context: html, text, full: html, text
• adding identifier hg18ContigDiff
  • src/hg/makeDb/schema/all.joiner - lines changed 5, context: html, text, full: html, text
• add information about itemRgb
  • src/hg/makeDb/trackDb/README - lines changed 7, context: html, text, full: html, text
• add note about how to load a bigBed file
  • src/hg/makeDb/trackDb/README - lines changed 9, context: html, text, full: html, text
• EXTRA should be on all loadTracks commands
  • src/hg/makeDb/trackDb/makefile - lines changed 4, context: html, text, full: html, text
• fixup copy and paste name errors from H. contortus to specific organism
  • src/hg/makeDb/trackDb/worm/bruMal1/description.html - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/worm/melHap1/description.html - lines changed 1, context: html, text, full: html, text
• improved regex for ctgPos2 search
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 1, context: html, text, full: html, text
• termRegex fixup for ctgPos2
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 2, context: html, text, full: html, text
• it is OK to rsync the js directory now, it is clean
  • src/product/scripts/updateHtml.sh - lines changed 1, context: html, text, full: html, text