File Changes for angie

v244_preview to v244_preview2 (2010-11-16 to 2010-11-30) v244

• src/hg/makeDb/doc/hg18.txt
  • lines changed 49, context: html, text, full: html, text
    Track #1229 (Denisova ancient genome data): Downloaded data fromEd / Max Planck Institut and loaded tables in hg18 and panTro2.
• src/hg/makeDb/doc/hg19.txt
  • lines changed 360, context: html, text, full: html, text
    Track #1684 (SNPs 132 (dbSNP)): dbSNP re-dumped their rs_fasta/* files,restoring almost 3,000 SNPs that we screened out because their sequences were missing or in the wrong file. I rebuilt snp132 parts that depend on rs_fasta. Also added auxiliary tables for orthologous SNPs in chimp/orang/macaque (snp132OrthoPanTro2PonAbe2RheMac2) and NCBI's annotations of coding changes (snp132CodingDbSnp). Made copy of hg19 sequence with single-nt substitutions converted to the IUPAC ambiguous character for the observed bases.
• src/hg/makeDb/doc/panTro2.txt
  • lines changed 26, context: html, text, full: html, text
    Track #1229 (Denisova ancient genome data): Downloaded data fromEd / Max Planck Institut and loaded tables in hg18 and panTro2.
• src/hg/makeDb/schema/all.joiner
  • lines changed 20, context: html, text, full: html, text
    Track #1684 (SNPs 132 (dbSNP)): dbSNP re-dumped their rs_fasta/* files,restoring almost 3,000 SNPs that we screened out because their sequences were missing or in the wrong file. I rebuilt snp132 parts that depend on rs_fasta. Also added auxiliary tables for orthologous SNPs in chimp/orang/macaque (snp132OrthoPanTro2PonAbe2RheMac2) and NCBI's annotations of coding changes (snp132CodingDbSnp). Made copy of hg19 sequence with single-nt substitutions converted to the IUPAC ambiguous character for the observed bases.
• src/hg/makeDb/trackDb/trackDb.ra
  • lines changed 8, context: html, text, full: html, text
    Track #1684 (SNPs 132 (dbSNP)): Adding search spec for snp132.