Commits for angie
switch to files view, user index
v244_preview to v244_preview2 (2010-11-16 to 2010-11-30) v244
- Track #1229 (Denisova ancient genome data): Downloaded data fromEd / Max Planck Institut and loaded tables in hg18 and panTro2.
- src/hg/makeDb/doc/hg18.txt - lines changed 49, context: html, text, full: html, text
- src/hg/makeDb/doc/panTro2.txt - lines changed 26, context: html, text, full: html, text
- Track #1684 (SNPs 132 (dbSNP)): dbSNP re-dumped their rs_fasta/* files,restoring almost 3,000 SNPs that we screened out because their
sequences were missing or in the wrong file. I rebuilt snp132 parts
that depend on rs_fasta. Also added auxiliary tables for orthologous
SNPs in chimp/orang/macaque (snp132OrthoPanTro2PonAbe2RheMac2) and
NCBI's annotations of coding changes (snp132CodingDbSnp). Made
copy of hg19 sequence with single-nt substitutions converted to the
IUPAC ambiguous character for the observed bases.
- src/hg/makeDb/doc/hg19.txt - lines changed 360, context: html, text, full: html, text
- src/hg/makeDb/schema/all.joiner - lines changed 20, context: html, text, full: html, text
- Track #1684 (SNPs 132 (dbSNP)): Adding search spec for snp132.
- src/hg/makeDb/trackDb/trackDb.ra - lines changed 8, context: html, text, full: html, text
switch to files view, user index