File Changes for cricket

v244_preview to v244_preview2 (2010-11-16 to 2010-11-30) v244

• src/hg/encode/DAFs/2.0/caltechRnaSeq.daf
  • lines changed 2, context: html, text, full: html, text
    Caltech changed to Caltech(Wold)
  • lines changed 1, context: html, text, full: html, text
    changed the bam mismatches to 6
• src/hg/encode/DAFs/2.0/haibCnv.daf
  • lines changed 44, context: html, text, full: html, text
    new Dafs for Haib, in progress
  • lines changed 22, context: html, text, full: html, text
    working on improving DAFs for HAIB
• src/hg/encode/DAFs/2.0/haibMethyl27.daf
  • lines changed 35, context: html, text, full: html, text
    new Dafs for Haib, in progress
  • lines changed 26, context: html, text, full: html, text
    working on improving DAFs for HAIB
• src/hg/encode/DAFs/2.0/haibRnaSeq.daf
  • lines changed 30, context: html, text, full: html, text
    new Dafs for Haib, in progress
  • lines changed 3, context: html, text, full: html, text
    working on improving DAFs for HAIB
• src/hg/makeDb/trackDb/cv/alpha/cv.ra
  • lines changed 10, context: html, text, full: html, text
    resolved merge conflict
• src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaRnaSeq.html
  • lines changed 6, context: html, text, full: html, text
    removed Rami Rauch from contact
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCaltechRnaSeq.ra
  • lines changed 2219, context: html, text, full: html, text
    adding the new files and metadata for replacement submissions
  • lines changed 373, context: html, text, full: html, text
    changed Caltech to Caltech(Wold)
  • lines changed 399, context: html, text, full: html, text
    added rnaExtract to metaData
  • lines changed 819, context: html, text, full: html, text
    fixed dates for resubmission
  • lines changed 285, context: html, text, full: html, text
    Added MCF-7 missing rep1
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra
  • lines changed 3337, context: html, text, full: html, text
    added hg18 fastqs
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromChip.ra
  • lines changed 1194, context: html, text, full: html, text
    added hg18 fastqs
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSunyGeneST.ra
  • lines changed 22, context: html, text, full: html, text
    added origAssembly hg18
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra
  • lines changed 1121, context: html, text, full: html, text
    in the fastq names, changed Musigg to Iggmus
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwDgf.ra
  • lines changed 49, context: html, text, full: html, text
    added hg18 fastqs
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwDnase.ra
  • lines changed 1318, context: html, text, full: html, text
    added hg18 fastqs
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwHistone.ra
  • lines changed 1539, context: html, text, full: html, text
    added hg18 fastqs
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwTfbs.ra
  • lines changed 916, context: html, text, full: html, text
    added hg18 fastqs
• src/hg/makeDb/trackDb/human/hg19/wgEncodeAffyRnaChip.ra
  • lines changed 8, context: html, text, full: html, text
    Removed the configuration options
  • lines changed 105, context: html, text, full: html, text
    changed labels to be the Encode standard
  • lines changed 183, context: html, text, full: html, text
    changed labels according to spreadsheet
  • lines changed 2, context: html, text, full: html, text
    changed labels according to spreadsheet
  • lines changed 27, context: html, text, full: html, text
    RT changed to rw
  • lines changed 8, context: html, text, full: html, text
    Put the filters back for configuration
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCaltechRnaSeq.ra
  • lines changed 1000, context: html, text, full: html, text
    adding the new files and metadata for replacement submissions
  • lines changed 74, context: html, text, full: html, text
    Added MCF-7 missing rep1
  • lines changed 154, context: html, text, full: html, text
    changing long labels to match ENCODE style guide
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.ra
  • lines changed 1, context: html, text, full: html, text
    changed long label for composite
  • lines changed 1, context: html, text, full: html, text
    Changed long label of composite #44
  • lines changed 2, context: html, text, full: html, text
    changed visibility to Kate's request #44 and #40
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGisRnaSeq.ra
  • lines changed 11, context: html, text, full: html, text
    changed visibility to Kate's request #44 and #40
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylRrbs.ra
  • lines changed 118, context: html, text, full: html, text
    Changed the long labels to Encode Standard
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDgf.ra
  • lines changed 48, context: html, text, full: html, text
    resolved merge conflict
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.ra
  • lines changed 336, context: html, text, full: html, text
    changed long labels to match Encode style guide