Commits for cricket

v244_preview to v244_preview2 (2010-11-16 to 2010-11-30) v244

• Removed the configuration options
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeAffyRnaChip.ra - lines changed 8, context: html, text, full: html, text
• new Dafs for Haib, in progress
  • src/hg/encode/DAFs/2.0/haibCnv.daf - lines changed 44, context: html, text, full: html, text
  • src/hg/encode/DAFs/2.0/haibMethyl27.daf - lines changed 35, context: html, text, full: html, text
  • src/hg/encode/DAFs/2.0/haibRnaSeq.daf - lines changed 30, context: html, text, full: html, text
• adding the new files and metadata for replacement submissions
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCaltechRnaSeq.ra - lines changed 2219, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCaltechRnaSeq.ra - lines changed 1000, context: html, text, full: html, text
• changed long label for composite
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.ra - lines changed 1, context: html, text, full: html, text
• Caltech changed to Caltech(Wold)
  • src/hg/encode/DAFs/2.0/caltechRnaSeq.daf - lines changed 2, context: html, text, full: html, text
• changed Caltech to Caltech(Wold)
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCaltechRnaSeq.ra - lines changed 373, context: html, text, full: html, text
• added rnaExtract to metaData
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCaltechRnaSeq.ra - lines changed 399, context: html, text, full: html, text
• fixed dates for resubmission
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCaltechRnaSeq.ra - lines changed 819, context: html, text, full: html, text
• Changed long label of composite #44
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.ra - lines changed 1, context: html, text, full: html, text
• added hg18 fastqs
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwDnase.ra - lines changed 1318, context: html, text, full: html, text
• added hg18 fastqs
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwDgf.ra - lines changed 49, context: html, text, full: html, text
• changed visibility to Kate's request #44 and #40
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGisRnaSeq.ra - lines changed 11, context: html, text, full: html, text
• added hg18 fastqs
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra - lines changed 3337, context: html, text, full: html, text
• added hg18 fastqs
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromChip.ra - lines changed 1194, context: html, text, full: html, text
• Added MCF-7 missing rep1
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCaltechRnaSeq.ra - lines changed 285, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCaltechRnaSeq.ra - lines changed 74, context: html, text, full: html, text
• resolved merge conflict
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 10, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDgf.ra - lines changed 48, context: html, text, full: html, text
• changed long labels to match Encode style guide
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.ra - lines changed 336, context: html, text, full: html, text
• changed labels to be the Encode standard
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeAffyRnaChip.ra - lines changed 105, context: html, text, full: html, text
• Changed the long labels to Encode Standard
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylRrbs.ra - lines changed 118, context: html, text, full: html, text
• changing long labels to match ENCODE style guide
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCaltechRnaSeq.ra - lines changed 154, context: html, text, full: html, text
• added hg18 fastqs
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwTfbs.ra - lines changed 916, context: html, text, full: html, text
• working on improving DAFs for HAIB
  • src/hg/encode/DAFs/2.0/haibCnv.daf - lines changed 22, context: html, text, full: html, text
  • src/hg/encode/DAFs/2.0/haibMethyl27.daf - lines changed 26, context: html, text, full: html, text
  • src/hg/encode/DAFs/2.0/haibRnaSeq.daf - lines changed 3, context: html, text, full: html, text
• changed labels according to spreadsheet
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeAffyRnaChip.ra - lines changed 183, context: html, text, full: html, text
• changed labels according to spreadsheet
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeAffyRnaChip.ra - lines changed 2, context: html, text, full: html, text
• removed Rami Rauch from contact
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaRnaSeq.html - lines changed 6, context: html, text, full: html, text
• RT changed to rw
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeAffyRnaChip.ra - lines changed 27, context: html, text, full: html, text
• Put the filters back for configuration
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeAffyRnaChip.ra - lines changed 8, context: html, text, full: html, text
• added hg18 fastqs
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwHistone.ra - lines changed 1539, context: html, text, full: html, text
• in the fastq names, changed Musigg to Iggmus
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 1121, context: html, text, full: html, text
• changed the bam mismatches to 6
  • src/hg/encode/DAFs/2.0/caltechRnaSeq.daf - lines changed 1, context: html, text, full: html, text
• added origAssembly hg18
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSunyGeneST.ra - lines changed 22, context: html, text, full: html, text