File Changes for tdreszer
switch to commits view, user indexv244_preview to v244_preview2 (2010-11-16 to 2010-11-30) v244
- src/hg/hgApi/hgApi.c
- lines changed 67, context: html, text, full: html, text
Made freeText search instead of drop downs for track search advanced when cv.ra reports 'searchable freeText'. This is useful for labVersion among others.
- src/hg/hgGateway/hgGateway.c
- lines changed 2, context: html, text, full: html, text
Removed a lot of ifdefs whose time had come. Renamed one function for clarity.
- src/hg/hgGene/hgGene.c
- lines changed 1, context: html, text, full: html, text
Fix a couple of places broken by the use of [] as a placeholder for empty in an old cart var
- lines changed 1, context: html, text, full: html, text
Sorry... fix sloppy checkin
- src/hg/hgTrackUi/hgTrackUi.c
- lines changed 1, context: html, text, full: html, text
Removed a lot of ifdefs whose time had come. Renamed one function for clarity.
- src/hg/hgTracks/bamTrack.c
- lines changed 6, context: html, text, full: html, text
Removed obsolete ifdef for SUBTRACKS_HAVE_VIS. Streamlined some composite vis code. Added support for remote tracks being rendered by AJAX callback. Currently ifdefed out.
- src/hg/hgTracks/config.c
- lines changed 2, context: html, text, full: html, text
Removed a lot of ifdefs whose time had come. Renamed one function for clarity.
- src/hg/hgTracks/hgTracks.c
- lines changed 129, context: html, text, full: html, text
Removed obsolete ifdef for SUBTRACKS_HAVE_VIS. Streamlined some composite vis code. Added support for remote tracks being rendered by AJAX callback. Currently ifdefed out.
- lines changed 25, context: html, text, full: html, text
Removed side buttons and nextItem arrows from 'view image' rightClick image
- lines changed 2, context: html, text, full: html, text
Explicitly declare custom tracks as custom, to support drag virgins being on top
- lines changed 3, context: html, text, full: html, text
Assert tripped, with Larry's help. wigMaf can look like subtrack but isn't.
- lines changed 7, context: html, text, full: html, text
Removed a lot of ifdefs whose time had come. Renamed one function for clarity.
- lines changed 6, context: html, text, full: html, text
Only one meassage is needed when the image exceeds 32,000 pixels.
- src/hg/hgTracks/hgTracks.h
- lines changed 22, context: html, text, full: html, text
Removed obsolete ifdef for SUBTRACKS_HAVE_VIS. Streamlined some composite vis code. Added support for remote tracks being rendered by AJAX callback. Currently ifdefed out.
- lines changed 1, context: html, text, full: html, text
Explicitly declare custom tracks as custom, to support drag virgins being on top
- src/hg/hgTracks/imageV2.c
- lines changed 11, context: html, text, full: html, text
Removed obsolete ifdef for SUBTRACKS_HAVE_VIS. Streamlined some composite vis code. Added support for remote tracks being rendered by AJAX callback. Currently ifdefed out.
- lines changed 18, context: html, text, full: html, text
Changed configureByPopup json boolean to configureBy none,popup or clickThrough.
- lines changed 1, context: html, text, full: html, text
Added 'inset' style so that BLAT sideButton is visibly different, as it is non-configurable.
- lines changed 6, context: html, text, full: html, text
Realized a little late that track->hasUi is the same as configurable.
- lines changed 97, context: html, text, full: html, text
Support for drag virgins being on top
- lines changed 6, context: html, text, full: html, text
Removed a lot of ifdefs whose time had come. Renamed one function for clarity.
- src/hg/hgTracks/imageV2.h
- lines changed 14, context: html, text, full: html, text
Removed obsolete ifdef for SUBTRACKS_HAVE_VIS. Streamlined some composite vis code. Added support for remote tracks being rendered by AJAX callback. Currently ifdefed out.
- lines changed 1, context: html, text, full: html, text
Changed configureByPopup json boolean to configureBy none,popup or clickThrough.
- lines changed 2, context: html, text, full: html, text
Support for drag virgins being on top
- src/hg/hgTracks/mainMain.c
- lines changed 4, context: html, text, full: html, text
Removed a lot of ifdefs whose time had come. Renamed one function for clarity.
- src/hg/hgTracks/searchTracks.c
- lines changed 3, context: html, text, full: html, text
Removed obsolete ifdef for SUBTRACKS_HAVE_VIS. Streamlined some composite vis code. Added support for remote tracks being rendered by AJAX callback. Currently ifdefed out.
- lines changed 1, context: html, text, full: html, text
Changed configureByPopup json boolean to configureBy none,popup or clickThrough.
- lines changed 77, context: html, text, full: html, text
Made freeText search instead of drop downs for track search advanced when cv.ra reports 'searchable freeText'. This is useful for labVersion among others.
- lines changed 8, context: html, text, full: html, text
Removed a lot of ifdefs whose time had come. Renamed one function for clarity.
- lines changed 128, context: html, text, full: html, text
Added format type drop down to advanced search tab. Whitelist is in code and all code is wrapped with ifdefs when feature becomes more of a hassle than it is worth at this time.
- lines changed 20, context: html, text, full: html, text
Missing comma in whitelist of formats caused a problem
- src/hg/hgTracks/simpleTracks.c
- lines changed 34, context: html, text, full: html, text
Removed obsolete ifdef for SUBTRACKS_HAVE_VIS. Streamlined some composite vis code. Added support for remote tracks being rendered by AJAX callback. Currently ifdefed out.
- lines changed 5, context: html, text, full: html, text
Removed temporary expansion of limitVisibility for trackImgOnly. Larry put in an in your face alert, when limitVisibility changes user requested vis via rightClick
- src/hg/htdocs/images/greenChecksm.png
- lines changed 0, context: html, text, full: html, text
Couple new icons to support rightClick
- src/hg/htdocs/images/invisible16.png
- lines changed 0, context: html, text, full: html, text
Couple new icons to support rightClick
- src/hg/htdocs/style/HGStyle.css
- lines changed 1, context: html, text, full: html, text
Added 'inset' style so that BLAT sideButton is visibly different, as it is non-configurable.
- src/hg/inc/cart.h
- lines changed 1, context: html, text, full: html, text
Added macro to tel whether cart var is really empty
- lines changed 1, context: html, text, full: html, text
Removed a lot of ifdefs whose time had come. Renamed one function for clarity.
- src/hg/inc/mdb.h
- lines changed 17, context: html, text, full: html, text
Support for searchable freeText in cv.ra
- src/hg/js/ajax.js
- lines changed 4, context: html, text, full: html, text
No functional consequence to check in. But it should be clear that the variable is a trackName and not a tableName. This is part of fix for redmine 1071.30.
- src/hg/js/hgTracks.js
- lines changed 10, context: html, text, full: html, text
Changed configureByPopup json boolean to configureBy none,popup or clickThrough.
- lines changed 14, context: html, text, full: html, text
Moved rightClick slected vis check icon to front to have text of all options line up
- lines changed 45, context: html, text, full: html, text
Made freeText search instead of drop downs for track search advanced when cv.ra reports 'searchable freeText'. This is useful for labVersion among others.
- lines changed 1, context: html, text, full: html, text
New format type search drop-down needs to be cleared.
- lines changed 17, context: html, text, full: html, text
Small corrections to when 'view in browser' is seen and vis that composites get set to. Also removed unused and unworking function
- src/hg/js/hui.js
- lines changed 80, context: html, text, full: html, text
Made filterComposite work with matrix.
- src/hg/js/utils.js
- lines changed 4, context: html, text, full: html, text
No functional consequence to check in. But it should be clear that the variable is a trackName and not a tableName. This is part of fix for redmine 1071.30.
- src/hg/lib/cart.c
- lines changed 174, context: html, text, full: html, text
Removed a bunch of composite reshaping ifdefs, now that track search is out the door.
- lines changed 1, context: html, text, full: html, text
Removed a lot of ifdefs whose time had come. Renamed one function for clarity.
- src/hg/lib/hui.c
- lines changed 4, context: html, text, full: html, text
Removed a lot of ifdefs whose time had come. Renamed one function for clarity.
- lines changed 3, context: html, text, full: html, text
Fixed redmine 1071.30. Two tracks in findtracks results with same table were tripping each others '...' metadata links. Link should be based on track name, not table name.
- lines changed 13, context: html, text, full: html, text
Fix for redmine 1883. NHGRI BIPs are found in 7 different genomes but only hg18 has downloads.
- lines changed 18, context: html, text, full: html, text
Made filterComposite work with matrix.
- src/hg/lib/mdb.c
- lines changed 34, context: html, text, full: html, text
Support for searchable freeText in cv.ra
- lines changed 6, context: html, text, full: html, text
Standardize 'Antibody' to 'antibody' in cv hash, since this is the mdb term of record
- src/hg/lib/metaTbl.as
- lines changed 9, context: html, text, full: html, text
Removed three obsolete files that were replaced by metaDb(mdb) long ago.
- src/hg/lib/metaTbl.c
- lines changed 1852, context: html, text, full: html, text
Removed three obsolete files that were replaced by metaDb(mdb) long ago.
- src/hg/lib/metaTbl.sql
- lines changed 22, context: html, text, full: html, text
Removed three obsolete files that were replaced by metaDb(mdb) long ago.
- src/hg/lib/searchTracks.c
- lines changed 4, context: html, text, full: html, text
Removed a lot of ifdefs whose time had come. Renamed one function for clarity.
- src/hg/lib/web.c
- lines changed 3, context: html, text, full: html, text
Fix a couple of places broken by the use of [] as a placeholder for empty in an old cart var
- lines changed 5, context: html, text, full: html, text
Removed a lot of ifdefs whose time had come. Renamed one function for clarity.
- src/hg/makeDb/doc/encodeDccHg19/broadHistoneBernstein.hg19.txt
- lines changed 828, context: html, text, full: html, text
Updated Illumina platform into labVersion metadata nd added 17 more submissions
- src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeBroadChipSeq.ra
- lines changed 369, context: html, text, full: html, text
Added Illumina info into lab version of fastqs and tagAligns
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeBroadHistone.ra
- lines changed 544, context: html, text, full: html, text
Update labVersions with Illumina info
- lines changed 904, context: html, text, full: html, text
Added 8 more submisions
- src/hg/makeDb/trackDb/human/hg19/wgEncodeBroadHistone.ra
- lines changed 141, context: html, text, full: html, text
Added 7 (not 8) new submissions
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.ra
- lines changed 95, context: html, text, full: html, text
Set composite up for matrix/filterComposite and changed some tags for sorting purposes
- src/inc/common.h
- lines changed 15, context: html, text, full: html, text
Added 3 state boolean to distinguish between unknown and set
- lines changed 2, context: html, text, full: html, text
Fixed SETTING_IS_OFF macro
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