Commits for tdreszer
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v244_preview to v244_preview2 (2010-11-16 to 2010-11-30) v244
- Added 3 state boolean to distinguish between unknown and set
- Removed a bunch of composite reshaping ifdefs, now that track search is out the door.
- Removed obsolete ifdef for SUBTRACKS_HAVE_VIS. Streamlined some composite vis code. Added support for remote tracks being rendered by AJAX callback. Currently ifdefed out.
- src/hg/hgTracks/bamTrack.c - lines changed 6, context: html, text, full: html, text
- src/hg/hgTracks/hgTracks.c - lines changed 129, context: html, text, full: html, text
- src/hg/hgTracks/hgTracks.h - lines changed 22, context: html, text, full: html, text
- src/hg/hgTracks/imageV2.c - lines changed 11, context: html, text, full: html, text
- src/hg/hgTracks/imageV2.h - lines changed 14, context: html, text, full: html, text
- src/hg/hgTracks/searchTracks.c - lines changed 3, context: html, text, full: html, text
- src/hg/hgTracks/simpleTracks.c - lines changed 34, context: html, text, full: html, text
- Added macro to tel whether cart var is really empty
- Fix a couple of places broken by the use of [] as a placeholder for empty in an old cart var
- Sorry... fix sloppy checkin
- Update labVersions with Illumina info
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeBroadHistone.ra - lines changed 544, context: html, text, full: html, text
- Brand new submissions
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeBroadHistone.ra - lines changed 1893, context: html, text, full: html, text
- Missed one submission
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeBroadHistone.ra - lines changed 130, context: html, text, full: html, text
- New submissions
- src/hg/makeDb/trackDb/human/hg19/wgEncodeBroadHistone.ra - lines changed 327, context: html, text, full: html, text
- Added Illumina info into lab version of fastqs and tagAligns
- src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeBroadChipSeq.ra - lines changed 369, context: html, text, full: html, text
- Updated Illumina platform into labVersion metadata nd added 17 more submissions
- src/hg/makeDb/doc/encodeDccHg19/broadHistoneBernstein.hg19.txt - lines changed 828, context: html, text, full: html, text
- Removed temporary expansion of limitVisibility for trackImgOnly. Larry put in an in your face alert, when limitVisibility changes user requested vis via rightClick
- src/hg/hgTracks/simpleTracks.c - lines changed 5, context: html, text, full: html, text
- Changed configureByPopup json boolean to configureBy none,popup or clickThrough.
- src/hg/hgTracks/imageV2.c - lines changed 18, context: html, text, full: html, text
- src/hg/hgTracks/imageV2.h - lines changed 1, context: html, text, full: html, text
- src/hg/hgTracks/searchTracks.c - lines changed 1, context: html, text, full: html, text
- Couple new icons to support rightClick
- src/hg/htdocs/images/greenChecksm.png - lines changed 0, context: html, text, full: html, text
- src/hg/htdocs/images/invisible16.png - lines changed 0, context: html, text, full: html, text
- Moved rightClick slected vis check icon to front to have text of all options line up
- Added 'inset' style so that BLAT sideButton is visibly different, as it is non-configurable.
- src/hg/hgTracks/imageV2.c - lines changed 1, context: html, text, full: html, text
- src/hg/htdocs/style/HGStyle.css - lines changed 1, context: html, text, full: html, text
- Realized a little late that track->hasUi is the same as configurable.
- src/hg/hgTracks/imageV2.c - lines changed 6, context: html, text, full: html, text
- Removed side buttons and nextItem arrows from 'view image' rightClick image
- src/hg/hgTracks/hgTracks.c - lines changed 25, context: html, text, full: html, text
- Explicitly declare custom tracks as custom, to support drag virgins being on top
- src/hg/hgTracks/hgTracks.c - lines changed 2, context: html, text, full: html, text
- src/hg/hgTracks/hgTracks.h - lines changed 1, context: html, text, full: html, text
- Support for drag virgins being on top
- src/hg/hgTracks/imageV2.c - lines changed 97, context: html, text, full: html, text
- src/hg/hgTracks/imageV2.h - lines changed 2, context: html, text, full: html, text
- Assert tripped, with Larry's help. wigMaf can look like subtrack but isn't.
- src/hg/hgTracks/hgTracks.c - lines changed 3, context: html, text, full: html, text
- Support for searchable freeText in cv.ra
- Made freeText search instead of drop downs for track search advanced when cv.ra reports 'searchable freeText'. This is useful for labVersion among others.
- src/hg/hgTracks/searchTracks.c - lines changed 77, context: html, text, full: html, text
- Added 8 more submisions
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeBroadHistone.ra - lines changed 904, context: html, text, full: html, text
- Added 7 (not 8) new submissions
- src/hg/makeDb/trackDb/human/hg19/wgEncodeBroadHistone.ra - lines changed 141, context: html, text, full: html, text
- Fixed SETTING_IS_OFF macro
- Standardize 'Antibody' to 'antibody' in cv hash, since this is the mdb term of record
- Removed a lot of ifdefs whose time had come. Renamed one function for clarity.
- src/hg/hgGateway/hgGateway.c - lines changed 2, context: html, text, full: html, text
- src/hg/hgTrackUi/hgTrackUi.c - lines changed 1, context: html, text, full: html, text
- src/hg/hgTracks/config.c - lines changed 2, context: html, text, full: html, text
- src/hg/hgTracks/hgTracks.c - lines changed 7, context: html, text, full: html, text
- src/hg/hgTracks/imageV2.c - lines changed 6, context: html, text, full: html, text
- src/hg/hgTracks/mainMain.c - lines changed 4, context: html, text, full: html, text
- src/hg/hgTracks/searchTracks.c - lines changed 8, context: html, text, full: html, text
- src/hg/lib/searchTracks.c - lines changed 4, context: html, text, full: html, text
- Added format type drop down to advanced search tab. Whitelist is in code and all code is wrapped with ifdefs when feature becomes more of a hassle than it is worth at this time.
- src/hg/hgTracks/searchTracks.c - lines changed 128, context: html, text, full: html, text
- Seven more submissions
- src/hg/makeDb/doc/encodeDccHg19/broadHistoneBernstein.hg19.txt - lines changed 86, context: html, text, full: html, text
- Missing comma in whitelist of formats caused a problem
- src/hg/hgTracks/searchTracks.c - lines changed 20, context: html, text, full: html, text
- New format type search drop-down needs to be cleared.
- No functional consequence to check in. But it should be clear that the variable is a trackName and not a tableName. This is part of fix for redmine 1071.30.
- Fixed redmine 1071.30. Two tracks in findtracks results with same table were tripping each others '...' metadata links. Link should be based on track name, not table name.
- Removed three obsolete files that were replaced by metaDb(mdb) long ago.
- src/hg/lib/metaTbl.c - lines changed 1852, context: html, text, full: html, text
- src/hg/lib/metaTbl.sql - lines changed 22, context: html, text, full: html, text
- Small corrections to when 'view in browser' is seen and vis that composites get set to. Also removed unused and unworking function
- Fix for redmine 1883. NHGRI BIPs are found in 7 different genomes but only hg18 has downloads.
- Made filterComposite work with matrix.
- Only one meassage is needed when the image exceeds 32,000 pixels.
- src/hg/hgTracks/hgTracks.c - lines changed 6, context: html, text, full: html, text
- Set composite up for matrix/filterComposite and changed some tags for sorting purposes
- src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.ra - lines changed 95, context: html, text, full: html, text
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