File Changes for braney

v245_preview2 to v245_base (2010-12-21 to 2011-01-04) v245

• src/hg/encode/docId/docIdSubmitDir/docIdSubmitDir.c
  • lines changed 2, context: html, text, full: html, text
    got rid of docIdTable global in library, added md5sum calculation in docIdTidy
• src/hg/encode/docId/docIdTidy/docIdTidy.c
  • lines changed 109, context: html, text, full: html, text
    got rid of docIdTable global in library, added md5sum calculation in docIdTidy
• src/hg/encode/docId/docIdView/docIdView.c
  • lines changed 1, context: html, text, full: html, text
    got rid of docIdTable global in library, added md5sum calculation in docIdTidy
• src/hg/encode/docId/inc/docId.h
  • lines changed 4, context: html, text, full: html, text
    got rid of docIdTable global in library, added md5sum calculation in docIdTidy
• src/hg/encode/docId/lib/docIdSub.c
  • lines changed 10, context: html, text, full: html, text
    got rid of docIdTable global in library, added md5sum calculation in docIdTidy
• src/hg/encode/encodeValidate/doEncodeValidate.pl
  • lines changed 1, context: html, text, full: html, text
    add peptideMapping
• src/hg/encode/validateFiles/validateFiles.c
  • lines changed 16, context: html, text, full: html, text
    catch errors that come from closing a gzip pipe before the whole file is read #390
  • lines changed 46, context: html, text, full: html, text
    add report information for fastq's and bigWig's #145
• src/hg/inc/versionInfo.h
  • lines changed 1, context: html, text, full: html, text
    New version number v245
• src/hg/makeDb/doc/danRer7.txt
  • lines changed 167, context: html, text, full: html, text
    started human proteins
  • lines changed 6, context: html, text, full: html, text
    finished tblastn... now doing chaining
  • lines changed 15, context: html, text, full: html, text
    finished Human protiens
• src/hg/makeDb/doc/encodeDccHg19/wgEncodeGencodeV5.txt
  • lines changed 30, context: html, text, full: html, text
    loading doc for Gencode V5
  • lines changed 20, context: html, text, full: html, text
    load metadata
  • lines changed 14, context: html, text, full: html, text
    table name changes
• src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra
  • lines changed 1, context: html, text, full: html, text
    add GencodeV5
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.ra
  • lines changed 2, context: html, text, full: html, text
    add ability to pairEndsByName
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV5.ra
  • lines changed 150, context: html, text, full: html, text
    add GencodeV5
• src/utils/qa/weeklybld/buildEnv.csh
  • lines changed 3, context: html, text, full: html, text
    v245 final build