Commits for braney

v245_preview2 to v245_base (2010-12-21 to 2011-01-04) v245

• catch errors that come from closing a gzip pipe before the whole file is read #390
  • src/hg/encode/validateFiles/validateFiles.c - lines changed 16, context: html, text, full: html, text
• add report information for fastq's and bigWig's #145
  • src/hg/encode/validateFiles/validateFiles.c - lines changed 46, context: html, text, full: html, text
• add GencodeV5
  • src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV5.ra - lines changed 150, context: html, text, full: html, text
• loading doc for Gencode V5
  • src/hg/makeDb/doc/encodeDccHg19/wgEncodeGencodeV5.txt - lines changed 30, context: html, text, full: html, text
• load metadata
  • src/hg/makeDb/doc/encodeDccHg19/wgEncodeGencodeV5.txt - lines changed 20, context: html, text, full: html, text
• add peptideMapping
  • src/hg/encode/encodeValidate/doEncodeValidate.pl - lines changed 1, context: html, text, full: html, text
• add ability to pairEndsByName
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlLongRnaSeq.ra - lines changed 2, context: html, text, full: html, text
• table name changes
  • src/hg/makeDb/doc/encodeDccHg19/wgEncodeGencodeV5.txt - lines changed 14, context: html, text, full: html, text
• started human proteins
  • src/hg/makeDb/doc/danRer7.txt - lines changed 167, context: html, text, full: html, text
• got rid of docIdTable global in library, added md5sum calculation in docIdTidy
  • src/hg/encode/docId/docIdSubmitDir/docIdSubmitDir.c - lines changed 2, context: html, text, full: html, text
  • src/hg/encode/docId/docIdTidy/docIdTidy.c - lines changed 109, context: html, text, full: html, text
  • src/hg/encode/docId/docIdView/docIdView.c - lines changed 1, context: html, text, full: html, text
  • src/hg/encode/docId/inc/docId.h - lines changed 4, context: html, text, full: html, text
  • src/hg/encode/docId/lib/docIdSub.c - lines changed 10, context: html, text, full: html, text
• finished tblastn... now doing chaining
  • src/hg/makeDb/doc/danRer7.txt - lines changed 6, context: html, text, full: html, text
• finished Human protiens
  • src/hg/makeDb/doc/danRer7.txt - lines changed 15, context: html, text, full: html, text
• v245 final build
  • src/utils/qa/weeklybld/buildEnv.csh - lines changed 3, context: html, text, full: html, text
• New version number v245
  • src/hg/inc/versionInfo.h - lines changed 1, context: html, text, full: html, text