File Changes for braney

v244_base to v245_preview (2010-12-07 to 2010-12-14) v245

• src/hg/encode/docId/docIdView/docIdView.c
  • lines changed 4, context: html, text, full: html, text
    fixes for #1486 note 11
• src/hg/encode/docId/docIdView/makefile
  • lines changed 3, context: html, text, full: html, text
    fixes for #1486 note 11
• src/hg/hgGene/hgGeneData/links.ra
  • lines changed 9, context: html, text, full: html, text
    add hgPal links to sgdGenes
• src/hg/hgTracks/hgTracks.c
  • lines changed 1, context: html, text, full: html, text
    add the ability to add a release tag(s) to include statements #452
• src/hg/inc/trackDb.h
  • lines changed 5, context: html, text, full: html, text
    add the ability to add a release tag(s) to include statements #452
• src/hg/lib/hgFindSpecCustom.c
  • lines changed 2, context: html, text, full: html, text
    add the ability to add a release tag(s) to include statements #452
• src/hg/lib/trackDbCustom.c
  • lines changed 41, context: html, text, full: html, text
    add the ability to add a release tag(s) to include statements #452
• src/hg/makeDb/hgTrackDb/hgTrackDb.c
  • lines changed 8, context: html, text, full: html, text
    add the ability to add a release tag(s) to include statements #452
• src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeHudsonalphaMethylSeq.ra
  • lines changed 61, context: html, text, full: html, text
    in response to #630, removed metadata from trackDb for MethylSeq tracks, discovered that H9ES had the same metadata as H9ESb, so wasn't in the the metaDb ra file, added it, delete "treatment=none" since it was always that, added view=Regions for a bunch where that was not set. Still confused about where the alignments are for the H9 data.
• src/hg/makeDb/trackDb/human/hg18/trackDb.ra
  • lines changed 9, context: html, text, full: html, text
    add a bunch of release alpha's to stanzas whose parent were release alpha
• src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra
  • lines changed 29, context: html, text, full: html, text
    in response to #630, removed metadata from trackDb for MethylSeq tracks, discovered that H9ES had the same metadata as H9ESb, so wasn't in the the metaDb ra file, added it, delete "treatment=none" since it was always that, added view=Regions for a bunch where that was not set. Still confused about where the alignments are for the H9 data.
  • lines changed 66, context: html, text, full: html, text
    remove some commented out stuff, and the Chai track which is kaput
  • lines changed 413, context: html, text, full: html, text
    restore metadata lines that I deleted, add release alpha version of wgEncodeHudsonalphaMethylSeq
• src/hg/makeDb/trackDb/human/hg19/trackDb.ra
  • lines changed 1, context: html, text, full: html, text
    back out an include of a file that hasn't been checked in
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGisChiaPet.html
  • lines changed 19, context: html, text, full: html, text
    htmlize
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGisRnaPet.ra
  • lines changed 4, context: html, text, full: html, text
    add release alpha tags to view stanzas where the parent is release alpha
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSunyAlbanyGeneSt.ra
  • lines changed 1, context: html, text, full: html, text
    add release alpha tags to view stanzas where the parent is release alpha
• src/hg/makeDb/trackDb/human/hg19/wgEncodeYaleRnaSeq.ra
  • lines changed 2, context: html, text, full: html, text
    add release alpha tags to view stanzas where the parent is release alpha
• src/hg/makeDb/trackDb/human/trackDb.chainNet.ra
  • lines changed 1, context: html, text, full: html, text
    add a bunch of release alpha's to stanzas whose parent were release alpha
• src/hg/makeDb/trackDb/human/trackDb.encode.ra
  • lines changed 16, context: html, text, full: html, text
    add a bunch of release alpha's to stanzas whose parent were release alpha
• src/hg/makeDb/trackDb/lamprey/trackDb.chainNet.ra
  • lines changed 1, context: html, text, full: html, text
    add release tags
• src/hg/makeDb/trackDb/lamprey/trackDb.ra
  • lines changed 1, context: html, text, full: html, text
    add release tags
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodeUwDnase.ra
  • lines changed 3, context: html, text, full: html, text
    add release tags to view stanzas
• src/hg/makeDb/trackDb/mouse/trackDb.chainNet.ra
  • lines changed 1, context: html, text, full: html, text
    add release alpha tag
• src/hg/makeDb/trackDb/tetraodon/trackDb.chainNet.ra
  • lines changed 1, context: html, text, full: html, text
    add release tag
• src/hg/makeDb/trackDb/trackDb.chainNet.ra
  • lines changed 8, context: html, text, full: html, text
    add a bunch of release alpha's to stanzas whose parent were release alpha
• src/hg/makeDb/trackDb/zebrafish/trackDb.chainNet.ra
  • lines changed 1, context: html, text, full: html, text
    add release tags
• src/hg/utils/tdbQuery/tdbQuery.c
  • lines changed 51, context: html, text, full: html, text
    add the ability to add a release tag(s) to include statements #452
• src/utils/qa/weeklybld/buildEnv.csh
  • lines changed 2, context: html, text, full: html, text
    v245 preview