Commits for braney
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v244_base to v245_preview (2010-12-07 to 2010-12-14) v245
- back out an include of a file that hasn't been checked in
- src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 1, context: html, text, full: html, text
- fixes for #1486 note 11
- src/hg/encode/docId/docIdView/docIdView.c - lines changed 4, context: html, text, full: html, text
- src/hg/encode/docId/docIdView/makefile - lines changed 3, context: html, text, full: html, text
- add a bunch of release alpha's to stanzas whose parent were release alpha
- src/hg/makeDb/trackDb/human/hg18/trackDb.ra - lines changed 9, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/trackDb.chainNet.ra - lines changed 1, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/trackDb.encode.ra - lines changed 16, context: html, text, full: html, text
- src/hg/makeDb/trackDb/trackDb.chainNet.ra - lines changed 8, context: html, text, full: html, text
- add release alpha tags to view stanzas where the parent is release alpha
- src/hg/makeDb/trackDb/human/hg19/wgEncodeGisRnaPet.ra - lines changed 4, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeSunyAlbanyGeneSt.ra - lines changed 1, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeYaleRnaSeq.ra - lines changed 2, context: html, text, full: html, text
- in response to #630, removed metadata from trackDb for MethylSeq tracks, discovered that H9ES had the same metadata as H9ESb, so wasn't in the the metaDb ra file, added it, delete "treatment=none" since it was always that, added view=Regions for a bunch where that was not set. Still confused about where the alignments are for the H9 data.
- src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeHudsonalphaMethylSeq.ra - lines changed 61, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra - lines changed 29, context: html, text, full: html, text
- remove some commented out stuff, and the Chai track which is kaput
- src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra - lines changed 66, context: html, text, full: html, text
- add release alpha tag
- src/hg/makeDb/trackDb/mouse/trackDb.chainNet.ra - lines changed 1, context: html, text, full: html, text
- add release tags to view stanzas
- src/hg/makeDb/trackDb/mouse/mm9/wgEncodeUwDnase.ra - lines changed 3, context: html, text, full: html, text
- add release tag
- src/hg/makeDb/trackDb/tetraodon/trackDb.chainNet.ra - lines changed 1, context: html, text, full: html, text
- add release tags
- src/hg/makeDb/trackDb/lamprey/trackDb.chainNet.ra - lines changed 1, context: html, text, full: html, text
- src/hg/makeDb/trackDb/lamprey/trackDb.ra - lines changed 1, context: html, text, full: html, text
- add release tags
- src/hg/makeDb/trackDb/zebrafish/trackDb.chainNet.ra - lines changed 1, context: html, text, full: html, text
- restore metadata lines that I deleted, add release alpha version of wgEncodeHudsonalphaMethylSeq
- src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra - lines changed 413, context: html, text, full: html, text
- htmlize
- src/hg/makeDb/trackDb/human/hg19/wgEncodeGisChiaPet.html - lines changed 19, context: html, text, full: html, text
- add hgPal links to sgdGenes
- src/hg/hgGene/hgGeneData/links.ra - lines changed 9, context: html, text, full: html, text
- add the ability to add a release tag(s) to include statements #452
- src/hg/hgTracks/hgTracks.c - lines changed 1, context: html, text, full: html, text
- src/hg/lib/hgFindSpecCustom.c - lines changed 2, context: html, text, full: html, text
- src/hg/lib/trackDbCustom.c - lines changed 41, context: html, text, full: html, text
- src/hg/makeDb/hgTrackDb/hgTrackDb.c - lines changed 8, context: html, text, full: html, text
- src/hg/utils/tdbQuery/tdbQuery.c - lines changed 51, context: html, text, full: html, text
- v245 preview
- src/utils/qa/weeklybld/buildEnv.csh - lines changed 2, context: html, text, full: html, text
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