File Changes for hiram

v245_preview to v245_preview2 (2010-12-14 to 2010-12-21) v245

• src/hg/hgc/hgc.c
  • lines changed 8, context: html, text, full: html, text
    indicate database on Get DNA screen for information
  • lines changed 2, context: html, text, full: html, text
    add database/organism to the View DNA sentence
• src/hg/htdocs/images/denisovaCave.jpg
  • lines changed 0, context: html, text, full: html, text
    Denisova cave entrance, copyright (C) 2010 Johanes Krause
• src/hg/makeDb/doc/danRer7.txt
  • lines changed 240, context: html, text, full: html, text
    setting priorities for danRer7 chain and net tracks
  • lines changed 32, context: html, text, full: html, text
    completed chain nets with danRer7
• src/hg/makeDb/doc/gasAcu1.txt
  • lines changed 18, context: html, text, full: html, text
    setting priorities for danRer7 chain and net tracks
• src/hg/makeDb/doc/hg18.nt.txt
  • lines changed 133, context: html, text, full: html, text
    indicate lift to hg19 procedure
• src/hg/makeDb/doc/hg19.txt
  • lines changed 27, context: html, text, full: html, text
    fixup loading procedure for Neandertal sequence reads
  • lines changed 63, context: html, text, full: html, text
    running danRer7 lastz
  • lines changed 14, context: html, text, full: html, text
    completed chain nets with danRer7
• src/hg/makeDb/doc/mm9.txt
  • lines changed 58, context: html, text, full: html, text
    completed danRer7 lastz run and swap
• src/hg/makeDb/doc/oryLat2.txt
  • lines changed 20, context: html, text, full: html, text
    setting priorities for danRer7 chain and net tracks
• src/hg/makeDb/doc/xenTro2.txt
  • lines changed 19, context: html, text, full: html, text
    completed chain nets with danRer7
• src/hg/makeDb/trackDb/human/bamSLDenisova.html
  • lines changed 70, context: html, text, full: html, text
    separate Methods section for each denisova track
• src/hg/makeDb/trackDb/human/denisova.html
  • lines changed 28, context: html, text, full: html, text
    updated methods and including cave photograph
  • lines changed 66, context: html, text, full: html, text
    obsolete html removed
• src/hg/makeDb/trackDb/human/denisovaModernHumans.html
  • lines changed 66, context: html, text, full: html, text
    separate Methods section for each denisova track
• src/hg/makeDb/trackDb/human/hg19/trackDb.ra
  • lines changed 4, context: html, text, full: html, text
    fixup type bigWig min/max limits and adding lifted Sel Swp Scan (S) to hg19
  • lines changed 19, context: html, text, full: html, text
    proper pennantIcon for neandertal track overrides
  • lines changed 4, context: html, text, full: html, text
    adding url link for fetch alt sequence hg19Patch2
  • lines changed 2, context: html, text, full: html, text
    generic url for hgc click in altSeqComposite
  • lines changed 1, context: html, text, full: html, text
    ntSeqContigs is actually ntSeqReads
• src/hg/makeDb/trackDb/human/trackDb.chainNet.ra
  • lines changed 3, context: html, text, full: html, text
    setting priorities for danRer7 chain and net tracks
• src/hg/makeDb/trackDb/human/trackDb.denisova.ra
  • lines changed 2, context: html, text, full: html, text
    separate Methods section for each denisova track
• src/hg/makeDb/trackDb/human/trackDb.nt.ra
  • lines changed 1, context: html, text, full: html, text
    fixup type bigWig min/max limits and adding lifted Sel Swp Scan (S) to hg19
• src/hg/makeDb/trackDb/medaka/trackDb.chainNet.ra
  • lines changed 5, context: html, text, full: html, text
    setting priorities for danRer7 chain and net tracks
• src/hg/makeDb/trackDb/mouse/trackDb.chainNet.ra
  • lines changed 3, context: html, text, full: html, text
    setting priorities for danRer7 chain and net tracks
• src/hg/makeDb/trackDb/stickleback/trackDb.chainNet.ra
  • lines changed 5, context: html, text, full: html, text
    setting priorities for danRer7 chain and net tracks
• src/hg/makeDb/trackDb/tetraodon/trackDb.chainNet.ra
  • lines changed 5, context: html, text, full: html, text
    setting priorities for danRer7 chain and net tracks
• src/hg/makeDb/trackDb/trackDb.chainNet.ra
  • lines changed 51, context: html, text, full: html, text
    completed danRer7 chain and net
• src/hg/makeDb/trackDb/xenTro/trackDb.chainNet.ra
  • lines changed 3, context: html, text, full: html, text
    setting priorities for danRer7 chain and net tracks
• src/hg/makeDb/trackDb/zebrafish/danRer7/trackDb.ra
  • lines changed 32, context: html, text, full: html, text
    eliminate duplicate EST and MRNA definitions
• src/hg/utils/refreshNamedSessionCustomTracks/beta.trashCleanMonitor.sh
  • lines changed 1, context: html, text, full: html, text
    eliminate hiram email address
• src/hg/utils/refreshNamedSessionCustomTracks/rr.trashCleanMonitor.sh
  • lines changed 1, context: html, text, full: html, text
    eliminate hiram email address