Commits for hiram

v245_preview to v245_preview2 (2010-12-14 to 2010-12-21) v245

• fixup type bigWig min/max limits and adding lifted Sel Swp Scan (S) to hg19
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.nt.ra - lines changed 1, context: html, text, full: html, text
• eliminate hiram email address
  • src/hg/utils/refreshNamedSessionCustomTracks/beta.trashCleanMonitor.sh - lines changed 1, context: html, text, full: html, text
  • src/hg/utils/refreshNamedSessionCustomTracks/rr.trashCleanMonitor.sh - lines changed 1, context: html, text, full: html, text
• proper pennantIcon for neandertal track overrides
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 19, context: html, text, full: html, text
• indicate lift to hg19 procedure
  • src/hg/makeDb/doc/hg18.nt.txt - lines changed 133, context: html, text, full: html, text
• adding url link for fetch alt sequence hg19Patch2
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 4, context: html, text, full: html, text
• generic url for hgc click in altSeqComposite
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 2, context: html, text, full: html, text
• indicate database on Get DNA screen for information
  • src/hg/hgc/hgc.c - lines changed 8, context: html, text, full: html, text
• Denisova cave entrance, copyright (C) 2010 Johanes Krause
  • src/hg/htdocs/images/denisovaCave.jpg - lines changed 0, context: html, text, full: html, text
• updated methods and including cave photograph
  • src/hg/makeDb/trackDb/human/denisova.html - lines changed 28, context: html, text, full: html, text
• ntSeqContigs is actually ntSeqReads
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 1, context: html, text, full: html, text
• separate Methods section for each denisova track
  • src/hg/makeDb/trackDb/human/bamSLDenisova.html - lines changed 70, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/denisovaModernHumans.html - lines changed 66, context: html, text, full: html, text
• obsolete html removed
  • src/hg/makeDb/trackDb/human/denisova.html - lines changed 66, context: html, text, full: html, text
• separate Methods section for each denisova track
  • src/hg/makeDb/trackDb/human/trackDb.denisova.ra - lines changed 2, context: html, text, full: html, text
• fixup loading procedure for Neandertal sequence reads
  • src/hg/makeDb/doc/hg19.txt - lines changed 27, context: html, text, full: html, text
• eliminate duplicate EST and MRNA definitions
  • src/hg/makeDb/trackDb/zebrafish/danRer7/trackDb.ra - lines changed 32, context: html, text, full: html, text
• completed danRer7 lastz run and swap
  • src/hg/makeDb/doc/mm9.txt - lines changed 58, context: html, text, full: html, text
• completed danRer7 chain and net
  • src/hg/makeDb/trackDb/trackDb.chainNet.ra - lines changed 51, context: html, text, full: html, text
• running danRer7 lastz
  • src/hg/makeDb/doc/hg19.txt - lines changed 63, context: html, text, full: html, text
• setting priorities for danRer7 chain and net tracks
  • src/hg/makeDb/doc/danRer7.txt - lines changed 240, context: html, text, full: html, text
  • src/hg/makeDb/doc/gasAcu1.txt - lines changed 18, context: html, text, full: html, text
  • src/hg/makeDb/doc/oryLat2.txt - lines changed 20, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.chainNet.ra - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/medaka/trackDb.chainNet.ra - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/trackDb.chainNet.ra - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/stickleback/trackDb.chainNet.ra - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tetraodon/trackDb.chainNet.ra - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/xenTro/trackDb.chainNet.ra - lines changed 3, context: html, text, full: html, text
• add database/organism to the View DNA sentence
  • src/hg/hgc/hgc.c - lines changed 2, context: html, text, full: html, text
• completed chain nets with danRer7
  • src/hg/makeDb/doc/danRer7.txt - lines changed 32, context: html, text, full: html, text
  • src/hg/makeDb/doc/hg19.txt - lines changed 14, context: html, text, full: html, text
  • src/hg/makeDb/doc/xenTro2.txt - lines changed 19, context: html, text, full: html, text