File Changes for angie

v245_base to v246_preview (2011-01-04 to 2010-01-11) v246

• src/hg/hgTables/filterFields.c
  • lines changed 4, context: html, text, full: html, text
    Handle default behavior outside of cgiMakeCheckboxGroup.
• src/hg/hgTrackUi/hgTrackUi.c
  • lines changed 135, context: html, text, full: html, text
    Track #1864 (SNPs 132 (dbSNP)): 1. Added new-in-snp132 columns (exceptions, submitters, alleles) to hgc. Wrapped an html table around several parts of the details page so that they could be made expandable/collapsible using utils.js's setTableRowVisibility. Also wrapped some SNP attributes in an html table for readability. 2. Changed attribute-filter cart variables in hg/lib/snp125Ui.c, hgTrackUi.c and hgTracks/variation.c to use one checkbox group per attribute, with the cart variable based on the track name, instead of one checkbox per attribute value with hardcoded cart var name that applies to all SNP tracks. Refactored to remove a lot of redundant extern global variables. Still need to make other SNP control cart vars based on track name.
• src/hg/hgTracks/variation.c
  • lines changed 131, context: html, text, full: html, text
    Track #1864 (SNPs 132 (dbSNP)): 1. Added new-in-snp132 columns (exceptions, submitters, alleles) to hgc. Wrapped an html table around several parts of the details page so that they could be made expandable/collapsible using utils.js's setTableRowVisibility. Also wrapped some SNP attributes in an html table for readability. 2. Changed attribute-filter cart variables in hg/lib/snp125Ui.c, hgTrackUi.c and hgTracks/variation.c to use one checkbox group per attribute, with the cart variable based on the track name, instead of one checkbox per attribute value with hardcoded cart var name that applies to all SNP tracks. Refactored to remove a lot of redundant extern global variables. Still need to make other SNP control cart vars based on track name.
• src/hg/hgc/hgc.c
  • lines changed 267, context: html, text, full: html, text
    Track #1864 (SNPs 132 (dbSNP)): 1. Added new-in-snp132 columns (exceptions, submitters, alleles) to hgc. Wrapped an html table around several parts of the details page so that they could be made expandable/collapsible using utils.js's setTableRowVisibility. Also wrapped some SNP attributes in an html table for readability. 2. Changed attribute-filter cart variables in hg/lib/snp125Ui.c, hgTrackUi.c and hgTracks/variation.c to use one checkbox group per attribute, with the cart variable based on the track name, instead of one checkbox per attribute value with hardcoded cart var name that applies to all SNP tracks. Refactored to remove a lot of redundant extern global variables. Still need to make other SNP control cart vars based on track name.
• src/hg/inc/cart.h
  • lines changed 3, context: html, text, full: html, text
    Keep the multShadow vars in the cart so that we can distinguish alist that has been set to empty from a list that has never been set. cartListVarExists is the external interface.
• src/hg/inc/snp125Ui.h
  • lines changed 80, context: html, text, full: html, text
    Track #1864 (SNPs 132 (dbSNP)): 1. Added new-in-snp132 columns (exceptions, submitters, alleles) to hgc. Wrapped an html table around several parts of the details page so that they could be made expandable/collapsible using utils.js's setTableRowVisibility. Also wrapped some SNP attributes in an html table for readability. 2. Changed attribute-filter cart variables in hg/lib/snp125Ui.c, hgTrackUi.c and hgTracks/variation.c to use one checkbox group per attribute, with the cart variable based on the track name, instead of one checkbox per attribute value with hardcoded cart var name that applies to all SNP tracks. Refactored to remove a lot of redundant extern global variables. Still need to make other SNP control cart vars based on track name.
• src/hg/js/hgTracks.js
  • lines changed 24, context: html, text, full: html, text
    Moved almost all functionality of toggleTrackGroupVisibility fromhgTracks.js into utils.js's setTableRowVisibility so hgc can use it too.
• src/hg/js/utils.js
  • lines changed 34, context: html, text, full: html, text
    Moved almost all functionality of toggleTrackGroupVisibility fromhgTracks.js into utils.js's setTableRowVisibility so hgc can use it too.
• src/hg/lib/cart.c
  • lines changed 20, context: html, text, full: html, text
    Keep the multShadow vars in the cart so that we can distinguish alist that has been set to empty from a list that has never been set. cartListVarExists is the external interface.
• src/hg/lib/snp125Ui.c
  • lines changed 258, context: html, text, full: html, text
    Track #1864 (SNPs 132 (dbSNP)): 1. Added new-in-snp132 columns (exceptions, submitters, alleles) to hgc. Wrapped an html table around several parts of the details page so that they could be made expandable/collapsible using utils.js's setTableRowVisibility. Also wrapped some SNP attributes in an html table for readability. 2. Changed attribute-filter cart variables in hg/lib/snp125Ui.c, hgTrackUi.c and hgTracks/variation.c to use one checkbox group per attribute, with the cart variable based on the track name, instead of one checkbox per attribute value with hardcoded cart var name that applies to all SNP tracks. Refactored to remove a lot of redundant extern global variables. Still need to make other SNP control cart vars based on track name.
• src/hg/makeDb/doc/hg19.txt
  • lines changed 20, context: html, text, full: html, text
    Track #1684 (SNPs 132 (dbSNP)): dbSNP re-dumped the allele frequency data;re-ran doDbSnp.pl to rebuild snp132, snp132ExceptionDesc, snp132Seq.
• src/hg/snp/snpLoad/snpNcbiToUcsc.c
  • lines changed 8, context: html, text, full: html, text
    Oops, bitfields needs to be comma-separated list not overwritten by each val.
• src/hg/utils/automation/doDbSnp.pl
  • lines changed 6, context: html, text, full: html, text
    Track #1684 (SNPs 132 (dbSNP)): Oops, there is no snp*Exceptions.bed.gzanymore. Don't try to load the table, and extract exception summary from the new exceptions column in the main snp table.
  • lines changed 1, context: html, text, full: html, text
    Fixed a spot that assumed that snp* would match ${snpBase} (it generally does, so there has been no symptom).
• src/lib/cheapcgi.c
  • lines changed 1, context: html, text, full: html, text
    In cgiMakeCheckboxGroupWithVals, don't force the first item to bechecked when no checked items are specified -- let the caller control the behavior.