Commits for angie
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v245_base to v246_preview (2011-01-04 to 2010-01-11) v246
- In cgiMakeCheckboxGroupWithVals, don't force the first item to bechecked when no checked items are specified -- let the caller control
the behavior.
- Handle default behavior outside of cgiMakeCheckboxGroup.
- src/hg/hgTables/filterFields.c - lines changed 4, context: html, text, full: html, text
- Keep the multShadow vars in the cart so that we can distinguish alist that has been set to empty from a list that has never been
set. cartListVarExists is the external interface.
- Track #1684 (SNPs 132 (dbSNP)): Oops, there is no snp*Exceptions.bed.gzanymore. Don't try to load the table, and extract exception summary from
the new exceptions column in the main snp table.
- src/hg/utils/automation/doDbSnp.pl - lines changed 6, context: html, text, full: html, text
- Track #1684 (SNPs 132 (dbSNP)): dbSNP re-dumped the allele frequency data;re-ran doDbSnp.pl to rebuild snp132, snp132ExceptionDesc, snp132Seq.
- src/hg/makeDb/doc/hg19.txt - lines changed 20, context: html, text, full: html, text
- Oops, bitfields needs to be comma-separated list not overwritten by each val.
- src/hg/snp/snpLoad/snpNcbiToUcsc.c - lines changed 8, context: html, text, full: html, text
- Fixed a spot that assumed that snp* would match ${snpBase} (it generally does, so there has been no symptom).
- src/hg/utils/automation/doDbSnp.pl - lines changed 1, context: html, text, full: html, text
- Moved almost all functionality of toggleTrackGroupVisibility fromhgTracks.js into utils.js's setTableRowVisibility so hgc can use it too.
- Track #1864 (SNPs 132 (dbSNP)):
1. Added new-in-snp132 columns (exceptions, submitters, alleles) to
hgc. Wrapped an html table around several parts of the details page
so that they could be made expandable/collapsible using utils.js's
setTableRowVisibility. Also wrapped some SNP attributes in an html
table for readability.
2. Changed attribute-filter cart variables in hg/lib/snp125Ui.c,
hgTrackUi.c and hgTracks/variation.c to use one checkbox group per
attribute, with the cart variable based on the track name, instead
of one checkbox per attribute value with hardcoded cart var name
that applies to all SNP tracks. Refactored to remove a lot of
redundant extern global variables. Still need to make other SNP
control cart vars based on track name.
- src/hg/hgTrackUi/hgTrackUi.c - lines changed 135, context: html, text, full: html, text
- src/hg/hgTracks/variation.c - lines changed 131, context: html, text, full: html, text
- src/hg/lib/snp125Ui.c - lines changed 258, context: html, text, full: html, text
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