File Changes for cline

v246_preview to v246_preview2 (2011-01-11 to 2011-01-18) v246

• src/hg/encode/DAFs/2.0/uncBsuProt.daf
  • lines changed 1, context: html, text, full: html, text
    Shortened the compositeSuffix from uncBsuProtgeno to uncBsuProt, after learning that their metadata includes localization as well as cell type. Shortening the composite name allows us to build short labels that still contain some recognizable (hopefully) representation of this metadata
• src/hg/inc/peptideMapping.h
  • lines changed 1, context: html, text, full: html, text
    Updated peptideMapping.h after revising peptideMapping.as and peptideMapping.sql. See the comments on those commits
• src/hg/lib/encode/peptideMapping.as
  • lines changed 1, context: html, text, full: html, text
    At the request of the Giddings lab, changed the precursor Mz field to a generic spectrum ID field. The purpose of the precursor Mz field was to act as an internal identifier for the spectrum. In time, they plan to identify spectra through MD5sums instead. Making this field a generically-named string provides the opportunity to accept a wider variety of IDs, including MD5sums as well as precursor Mzs. Also, made a non-unique key that includes the spectrum Id, because it turns out that the precursor Mz is not unique
• src/hg/lib/encode/peptideMapping.c
  • lines changed 5, context: html, text, full: html, text
    I'd forgotten to commit peptideMapping.c along with peptideMapping.as and peptideMapping.sql. See the comments in that commit
• src/hg/lib/encode/peptideMapping.sql
  • lines changed 2, context: html, text, full: html, text
    At the request of the Giddings lab, changed the precursor Mz field to a generic spectrum ID field. The purpose of the precursor Mz field was to act as an internal identifier for the spectrum. In time, they plan to identify spectra through MD5sums instead. Making this field a generically-named string provides the opportunity to accept a wider variety of IDs, including MD5sums as well as precursor Mzs. Also, made a non-unique key that includes the spectrum Id, because it turns out that the precursor Mz is not unique
• src/hg/makeDb/trackDb/cv/alpha/cv.ra
  • lines changed 119, context: html, text, full: html, text
    Provisionally added seven new cell types for the Stam lab
  • lines changed 3, context: html, text, full: html, text
    Added a couple 'order URLs' for cells that are obtained from an individual rather than a vendor
  • lines changed 32, context: html, text, full: html, text
    Added two new antibodies for HudsonAlpha
  • lines changed 2, context: html, text, full: html, text
    Tweaked the validation doc labels on the two new antibodies, after noticing that any parens in the validation label get stripped out
  • lines changed 7, context: html, text, full: html, text
    Added the membrane fraction localization
  • lines changed 107, context: html, text, full: html, text
    Added six new antibodies
  • lines changed 9, context: html, text, full: html, text
    Selected several provisional stanzas