File Changes for markd

v246_base to v247_preview (2011-01-25 to 2011-02-01) v247

• src/hg/hgTables/greatData/supportedAssemblies.txt
  • lines changed 1, context: html, text, full: html, text
    added danRer7 to list of GREAT genomes (2654)
• src/hg/inc/genePred.h
  • lines changed 3, context: html, text, full: html, text
    modified refSeqGet to return results in predictiable order to minimize test failures when database changes
• src/hg/lib/genePred.c
  • lines changed 13, context: html, text, full: html, text
    modified refSeqGet to return results in predictiable order to minimize test failures when database changes
• src/hg/txGene/txGeneValidation/makefile
  • lines changed 3, context: html, text, full: html, text
    don't break when SCRIPTS variable is overridden
• src/hg/utils/refSeqGet/refSeqGet.c
  • lines changed 44, context: html, text, full: html, text
    modified refSeqGet to return results in predictiable order to minimize test failures when database changes
• src/hg/utils/refSeqGet/refSeqVerInfo.c
  • lines changed 20, context: html, text, full: html, text
    modified refSeqGet to return results in predictiable order to minimize test failures when database changes
• src/hg/utils/refSeqGet/refSeqVerInfo.h
  • lines changed 2, context: html, text, full: html, text
    modified refSeqGet to return results in predictiable order to minimize test failures when database changes
• src/hg/utils/refSeqGet/tests/expected/basicListTest.gp
  • lines changed 3, context: html, text, full: html, text
    modified refSeqGet to return results in predictiable order to minimize test failures when database changes
• src/hg/utils/refSeqGet/tests/expected/basicListTest.meta
  • lines changed 4, context: html, text, full: html, text
    modified refSeqGet to return results in predictiable order to minimize test failures when database changes
• src/hg/utils/refSeqGet/tests/expected/basicListTest.psl
  • lines changed 4, context: html, text, full: html, text
    modified refSeqGet to return results in predictiable order to minimize test failures when database changes
• src/hg/utils/refSeqGet/tests/expected/basicListTest.rna.fa
  • lines changed 12, context: html, text, full: html, text
    modified refSeqGet to return results in predictiable order to minimize test failures when database changes
• src/hg/utils/refSeqGet/tests/expected/versionedListTest.meta
  • lines changed 2, context: html, text, full: html, text
    modified refSeqGet to return results in predictiable order to minimize test failures when database changes
• src/hg/utils/refSeqGet/tests/expected/versionedListTest.psl
  • lines changed 2, context: html, text, full: html, text
    modified refSeqGet to return results in predictiable order to minimize test failures when database changes
• src/hg/utils/refSeqGet/tests/expected/versionedListTest.rna.fa
  • lines changed 6, context: html, text, full: html, text
    modified refSeqGet to return results in predictiable order to minimize test failures when database changes
• src/hg/utils/refreshNamedSessionCustomTracks/makefile
  • lines changed 5, context: html, text, full: html, text
    refreshNamedSessionCustomTracks doesn't compile on OS/X due lack of sigtimedwait, so just disable compiling until someone really needs it
• src/hg/utils/refreshNamedSessionCustomTracks/refreshNamedSessionCustomTracks.c
  • lines changed 1, context: html, text, full: html, text
    refreshNamedSessionCustomTracks doesn't compile on OS/X due lack of sigtimedwait, so just disable compiling until someone really needs it
• src/inc/common.mk
  • lines changed 4, context: html, text, full: html, text
    OSTYPE is only an environment variable in tcsh, so explicty create a make variable SYS using uname