Commits for markd

v246_base to v247_preview (2011-01-25 to 2011-02-01) v247

• modified refSeqGet to return results in predictiable order to minimize test failures when database changes
  • src/hg/inc/genePred.h - lines changed 3, context: html, text, full: html, text
  • src/hg/lib/genePred.c - lines changed 13, context: html, text, full: html, text
  • src/hg/utils/refSeqGet/refSeqGet.c - lines changed 44, context: html, text, full: html, text
  • src/hg/utils/refSeqGet/refSeqVerInfo.c - lines changed 20, context: html, text, full: html, text
  • src/hg/utils/refSeqGet/refSeqVerInfo.h - lines changed 2, context: html, text, full: html, text
  • src/hg/utils/refSeqGet/tests/expected/basicListTest.gp - lines changed 3, context: html, text, full: html, text
  • src/hg/utils/refSeqGet/tests/expected/basicListTest.meta - lines changed 4, context: html, text, full: html, text
  • src/hg/utils/refSeqGet/tests/expected/basicListTest.psl - lines changed 4, context: html, text, full: html, text
  • src/hg/utils/refSeqGet/tests/expected/basicListTest.rna.fa - lines changed 12, context: html, text, full: html, text
  • src/hg/utils/refSeqGet/tests/expected/versionedListTest.meta - lines changed 2, context: html, text, full: html, text
  • src/hg/utils/refSeqGet/tests/expected/versionedListTest.psl - lines changed 2, context: html, text, full: html, text
  • src/hg/utils/refSeqGet/tests/expected/versionedListTest.rna.fa - lines changed 6, context: html, text, full: html, text
• Merge branch 'refSeqGetOrdering'
• OSTYPE is only an environment variable in tcsh, so explicty create a make variable SYS using uname
  • src/inc/common.mk - lines changed 4, context: html, text, full: html, text
• don't break when SCRIPTS variable is overridden
  • src/hg/txGene/txGeneValidation/makefile - lines changed 3, context: html, text, full: html, text
• refreshNamedSessionCustomTracks doesn't compile on OS/X due lack of sigtimedwait, so just disable compiling until someone really needs it
  • src/hg/utils/refreshNamedSessionCustomTracks/makefile - lines changed 5, context: html, text, full: html, text
  • src/hg/utils/refreshNamedSessionCustomTracks/refreshNamedSessionCustomTracks.c - lines changed 1, context: html, text, full: html, text
• added danRer7 to list of GREAT genomes (2654)
  • src/hg/hgTables/greatData/supportedAssemblies.txt - lines changed 1, context: html, text, full: html, text
• Merge branch 'master' of markd@hgwdev.cse.ucsc.edu:/data/git/kent