File Changes for tdreszer

v246_base to v247_preview (2011-01-25 to 2011-02-01) v247

• src/hg/hgApi/hgApi.c
  • lines changed 2, context: html, text, full: html, text
    Removed obsolete ifdef
  • lines changed 9, context: html, text, full: html, text
    Reworked searchTracks +/- buttons to use javascript and fixed some bugs seen when files search is enabled as a tab in track search.
• src/hg/hgTrackUi/hgTrackUi.c
  • lines changed 5, context: html, text, full: html, text
    Begin to standardize on cfgByCfgType so that hgTrackUi and hui can use common code.
• src/hg/hgTracks/hgTracks.c
  • lines changed 9, context: html, text, full: html, text
    Fix bug Hiram pointed out and fixed bug where selectingh track search from gateway sometimes landed on configuretracks page instead
• src/hg/hgTracks/searchTracks.c
  • lines changed 8, context: html, text, full: html, text
    Removed an old ifdef
  • lines changed 26, context: html, text, full: html, text
    Reworked searchTracks +/- buttons to use javascript and fixed some bugs seen when files search is enabled as a tab in track search.
• src/hg/hgTracks/simpleTracks.c
  • lines changed 3, context: html, text, full: html, text
    filterBy setting should allow spaces by wrapping strings in quotes. Beds should be filterable by filterBy
  • lines changed 2, context: html, text, full: html, text
    Newline char? From where?
• src/hg/inc/hui.h
  • lines changed 3, context: html, text, full: html, text
    Made cfgByCfgType() public so that hgTrackUi can standardize to this call.
• src/hg/inc/mdb.h
  • lines changed 5, context: html, text, full: html, text
    Made mdbUpdate -recreate faster by doing minimal error checking and loading with all insert statements.
  • lines changed 6, context: html, text, full: html, text
    Added -validate option to mdbPrint, which will validate mdb vars against cv.ra.
  • lines changed 3, context: html, text, full: html, text
    By Cricket's request, added -composite as an special case option for commonly queried var
  • lines changed 3, context: html, text, full: html, text
    In mdb validate, vars that are not defined in cv should be considered invalid if and only if -validateFull requested. On the otherhand, mdbUpdate -test will consider those vars as invalid.
• src/hg/js/hgTracks.js
  • lines changed 194, context: html, text, full: html, text
    Reworked searchTracks +/- buttons to use javascript and fixed some bugs seen when files search is enabled as a tab in track search.
• src/hg/lib/fileUi.c
  • lines changed 2, context: html, text, full: html, text
    Found files needs to be in div.filesFound for javascript to work.
• src/hg/lib/hui.c
  • lines changed 6, context: html, text, full: html, text
    filterBy setting should allow spaces by wrapping strings in quotes. Beds should be filterable by filterBy
  • lines changed 4, context: html, text, full: html, text
    Made cfgByCfgType() public so that hgTrackUi can standardize to this call.
• src/hg/lib/mdb.c
  • lines changed 74, context: html, text, full: html, text
    Made mdbUpdate -recreate faster by doing minimal error checking and loading with all insert statements.
  • lines changed 195, context: html, text, full: html, text
    Added -validate option to mdbPrint, which will validate mdb vars against cv.ra.
  • lines changed 6, context: html, text, full: html, text
    In mdbObjsValidate() added verbose=2 print of vars that are not defined in cv.ra.
  • lines changed 33, context: html, text, full: html, text
    By Cricket's request, added -composite as an special case option for commonly queried var
  • lines changed 8, context: html, text, full: html, text
    In mdb validate, vars that are not defined in cv should be considered invalid if and only if -validateFull requested. On the otherhand, mdbUpdate -test will consider those vars as invalid.
• src/hg/makeDb/doc/encodeDccHg19/broadHistoneBernstein.hg19.txt
  • lines changed 439, context: html, text, full: html, text
    Check in some of this freeze work
• src/hg/makeDb/doc/encodeDccHg19/openChromCrawford.hg19.txt
  • lines changed 746, context: html, text, full: html, text
    Check in some of this freeze work
• src/hg/makeDb/mdbUpdate/mdbPrint.c
  • lines changed 30, context: html, text, full: html, text
    Added -validate option to mdbPrint, which will validate mdb vars against cv.ra.
  • lines changed 10, context: html, text, full: html, text
    By Cricket's request, added -composite as an special case option for commonly queried var
  • lines changed 7, context: html, text, full: html, text
    In mdb validate, vars that are not defined in cv should be considered invalid if and only if -validateFull requested. On the otherhand, mdbUpdate -test will consider those vars as invalid.
• src/hg/makeDb/mdbUpdate/mdbUpdate.c
  • lines changed 3, context: html, text, full: html, text
    Made mdbUpdate -recreate faster by doing minimal error checking and loading with all insert statements.
  • lines changed 17, context: html, text, full: html, text
    By Cricket's request, added -composite as an special case option for commonly queried var
  • lines changed 7, context: html, text, full: html, text
    Added validation to -test option of mdbUpdate
  • lines changed 4, context: html, text, full: html, text
    In mdb validate, vars that are not defined in cv should be considered invalid if and only if -validateFull requested. On the otherhand, mdbUpdate -test will consider those vars as invalid.
  • lines changed 3, context: html, text, full: html, text
    Clarified the invalids message for mdbUpdate
• src/hg/makeDb/trackDb/cv/alpha/cv.ra
  • lines changed 126, context: html, text, full: html, text
    Fixed typeOfTerm 'validate' settings and added 'priority' to typeOfTerm stanzas. No provisional tags have been added. If Melissa disapproves of the changes then they can be backed out. However, I need them in for mdbPrint -validate to work.
  • lines changed 3, context: html, text, full: html, text
    A touch up to some of the validate settings
  • lines changed 1, context: html, text, full: html, text
    One mre tweek to rank validation
  • lines changed 8, context: html, text, full: html, text
    Added project into typeOfTerms for mdbPrint -validate purposes.
• src/hg/makeDb/trackDb/human/hg18/wgEncodeBroadHmm.ra
  • lines changed 16, context: html, text, full: html, text
    Broad HMM is modeling with one l. Can use filterBy on name.
  • lines changed 14, context: html, text, full: html, text
    Getting cfg settings for bed9 requires 'bed 9 .'
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromChip.ra
  • lines changed 8, context: html, text, full: html, text
    Fixed dataTypes, updated cross-gender bam's labVersion, revoked FAIRE/NHBE
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromDnase.ra
  • lines changed 29, context: html, text, full: html, text
    Fixing some ambiguous genders
  • lines changed 45, context: html, text, full: html, text
    Fixed dataTypes, updated cross-gender bam's labVersion, revoked FAIRE/NHBE
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromFaire.ra
  • lines changed 11, context: html, text, full: html, text
    Fixing some ambiguous genders
  • lines changed 117, context: html, text, full: html, text
    Fixed dataTypes, updated cross-gender bam's labVersion, revoked FAIRE/NHBE
• src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromFaire.ra
  • lines changed 33, context: html, text, full: html, text
    Fixed dataTypes, updated cross-gender bam's labVersion, revoked FAIRE/NHBE
• src/lib/ra.c
  • lines changed 2, context: html, text, full: html, text
    Added -validate option to mdbPrint, which will validate mdb vars against cv.ra.