Commits for tdreszer
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v246_base to v247_preview (2011-01-25 to 2011-02-01) v247
- Fixing some ambiguous genders
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromDnase.ra - lines changed 29, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromFaire.ra - lines changed 11, context: html, text, full: html, text
- filterBy setting should allow spaces by wrapping strings in quotes. Beds should be filterable by filterBy
- src/hg/hgTracks/simpleTracks.c - lines changed 3, context: html, text, full: html, text
- Broad HMM is modeling with one l. Can use filterBy on name.
- src/hg/makeDb/trackDb/human/hg18/wgEncodeBroadHmm.ra - lines changed 16, context: html, text, full: html, text
- Newline char? From where?
- src/hg/hgTracks/simpleTracks.c - lines changed 2, context: html, text, full: html, text
- Fixed dataTypes, updated cross-gender bam's labVersion, revoked FAIRE/NHBE
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromChip.ra - lines changed 8, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromDnase.ra - lines changed 45, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromFaire.ra - lines changed 117, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromFaire.ra - lines changed 33, context: html, text, full: html, text
- Fix bug Hiram pointed out and fixed bug where selectingh track search from gateway sometimes landed on configuretracks page instead
- src/hg/hgTracks/hgTracks.c - lines changed 9, context: html, text, full: html, text
- Made mdbUpdate -recreate faster by doing minimal error checking and loading with all insert statements.
- src/hg/makeDb/mdbUpdate/mdbUpdate.c - lines changed 3, context: html, text, full: html, text
- Removed an old ifdef
- src/hg/hgTracks/searchTracks.c - lines changed 8, context: html, text, full: html, text
- Fixed typeOfTerm 'validate' settings and added 'priority' to typeOfTerm stanzas. No provisional tags have been added. If Melissa disapproves of the changes then they can be backed out. However, I need them in for mdbPrint -validate to work.
- src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 126, context: html, text, full: html, text
- Added -validate option to mdbPrint, which will validate mdb vars against cv.ra.
- src/hg/makeDb/mdbUpdate/mdbPrint.c - lines changed 30, context: html, text, full: html, text
- Merge branch 'master' of tdreszer@hgwdev.cse.ucsc.edu:/data/git/kent
- Check in some of this freeze work
- src/hg/makeDb/doc/encodeDccHg19/broadHistoneBernstein.hg19.txt - lines changed 439, context: html, text, full: html, text
- src/hg/makeDb/doc/encodeDccHg19/openChromCrawford.hg19.txt - lines changed 746, context: html, text, full: html, text
- Merge branch 'master' of tdreszer@hgwdev.cse.ucsc.edu:/data/git/kent
- Getting cfg settings for bed9 requires 'bed 9 .'
- src/hg/makeDb/trackDb/human/hg18/wgEncodeBroadHmm.ra - lines changed 14, context: html, text, full: html, text
- Made cfgByCfgType() public so that hgTrackUi can standardize to this call.
- Begin to standardize on cfgByCfgType so that hgTrackUi and hui can use common code.
- src/hg/hgTrackUi/hgTrackUi.c - lines changed 5, context: html, text, full: html, text
- Removed obsolete ifdef
- A touch up to some of the validate settings
- src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 3, context: html, text, full: html, text
- One mre tweek to rank validation
- src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 1, context: html, text, full: html, text
- In mdbObjsValidate() added verbose=2 print of vars that are not defined in cv.ra.
- By Cricket's request, added -composite as an special case option for commonly queried var
- src/hg/makeDb/mdbUpdate/mdbPrint.c - lines changed 10, context: html, text, full: html, text
- src/hg/makeDb/mdbUpdate/mdbUpdate.c - lines changed 17, context: html, text, full: html, text
- Added validation to -test option of mdbUpdate
- src/hg/makeDb/mdbUpdate/mdbUpdate.c - lines changed 7, context: html, text, full: html, text
- Added project into typeOfTerms for mdbPrint -validate purposes.
- src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 8, context: html, text, full: html, text
- In mdb validate, vars that are not defined in cv should be considered invalid if and only if -validateFull requested. On the otherhand, mdbUpdate -test will consider those vars as invalid.
- src/hg/makeDb/mdbUpdate/mdbPrint.c - lines changed 7, context: html, text, full: html, text
- src/hg/makeDb/mdbUpdate/mdbUpdate.c - lines changed 4, context: html, text, full: html, text
- Clarified the invalids message for mdbUpdate
- src/hg/makeDb/mdbUpdate/mdbUpdate.c - lines changed 3, context: html, text, full: html, text
- Found files needs to be in div.filesFound for javascript to work.
- Reworked searchTracks +/- buttons to use javascript and fixed some bugs seen when files search is enabled as a tab in track search.
- src/hg/hgTracks/searchTracks.c - lines changed 26, context: html, text, full: html, text
- src/hg/js/hgTracks.js - lines changed 194, context: html, text, full: html, text
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