File Changes for braney

v247_preview to v247_preview2 (2011-02-01 to 2011-02-08) v247

• src/hg/encode/encodeValidate/config/fields.ra
  • lines changed 7, context: html, text, full: html, text
    add run field
• src/hg/hgTracks/encode.c
  • lines changed 26, context: html, text, full: html, text
    if you add exonArrows to broadPeak trackDb, draw the arrows on full size track #2189
• src/hg/hgTracks/hgTracks.h
  • lines changed 4, context: html, text, full: html, text
    oops... snake stuff that should have been in the earlier commit
• src/hg/hgTracks/makefile
  • lines changed 1, context: html, text, full: html, text
    add some code to draw snakes which will be used to draw Benedict's cactus graphs in ancestrla root browsers
• src/hg/hgTracks/simpleTracks.c
  • lines changed 14, context: html, text, full: html, text
    change interaction track (eg. ChiaPet) to use score to color, rather than chrom color
  • lines changed 4, context: html, text, full: html, text
    add some code to draw snakes which will be used to draw Benedict's cactus graphs in ancestrla root browsers
• src/hg/hgTracks/snakeTrack.c
  • lines changed 917, context: html, text, full: html, text
    add some code to draw snakes which will be used to draw Benedict's cactus graphs in ancestrla root browsers
• src/hg/lib/hdb.c
  • lines changed 6, context: html, text, full: html, text
    check to see if HTTP_HOST is null before assuming that it isn't
• src/hg/lib/trackDbCustom.c
  • lines changed 2, context: html, text, full: html, text
    add bedLogR support to composite UI
• src/hg/makeDb/trackDb/cv/alpha/cv.ra
  • lines changed 3, context: html, text, full: html, text
    fix up GIS-Ruan, and run type
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/makefile
  • lines changed 5, context: html, text, full: html, text
    GisChiaPet metadata
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGisChiaPet.ra
  • lines changed 2208, context: html, text, full: html, text
    GisChiaPet metadata
• src/hg/makeDb/trackDb/human/hg19/trackDb.ra
  • lines changed 13, context: html, text, full: html, text
    Matt Weirauch's TFBS for hg19... yay Matt!
  • lines changed 13, context: html, text, full: html, text
    add snake type, will be used to display Benedict's cactus graphs on the root ancestor
  • lines changed 1, context: html, text, full: html, text
    tag snake track with release alpha
• src/hg/makeDb/trackDb/human/hg19/wgEncodeDukeAffyExon.ra
  • lines changed 1, context: html, text, full: html, text
    add the ability to add exonArrows to broadPeak tracks, add them to wgEncodeDukeAffyExon
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGisChiaPet.ra
  • lines changed 2, context: html, text, full: html, text
    color wgEncodeGisChiaPet by score
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibRnaSeq.ra
  • lines changed 32, context: html, text, full: html, text
    change genepred to genePred
• src/hg/makeDb/trackDb/tagTypes.tab
  • lines changed 2, context: html, text, full: html, text
    color wgEncodeGisChiaPet by score
  • lines changed 1, context: html, text, full: html, text
    add the ability to add exonArrows to broadPeak tracks, add them to wgEncodeDukeAffyExon
• src/utils/qa/weeklybld/buildEnv.csh
  • lines changed 2, context: html, text, full: html, text
    v247 preview2