Commits for braney

v247_preview to v247_preview2 (2011-02-01 to 2011-02-08) v247

• add bedLogR support to composite UI
  • src/hg/lib/trackDbCustom.c - lines changed 2, context: html, text, full: html, text
• change interaction track (eg. ChiaPet) to use score to color, rather than chrom color
  • src/hg/hgTracks/simpleTracks.c - lines changed 14, context: html, text, full: html, text
• color wgEncodeGisChiaPet by score
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGisChiaPet.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tagTypes.tab - lines changed 2, context: html, text, full: html, text
• check to see if HTTP_HOST is null before assuming that it isn't
  • src/hg/lib/hdb.c - lines changed 6, context: html, text, full: html, text
• Merge branch 'master' of braney@hgwdev.cse.ucsc.edu:/data/git/kent
• if you add exonArrows to broadPeak trackDb, draw the arrows on full size track #2189
  • src/hg/hgTracks/encode.c - lines changed 26, context: html, text, full: html, text
• Merge branch 'master' of braney@hgwdev.cse.ucsc.edu:/data/git/kent
• add the ability to add exonArrows to broadPeak tracks, add them to wgEncodeDukeAffyExon
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeDukeAffyExon.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tagTypes.tab - lines changed 1, context: html, text, full: html, text
• Merge branch 'master' of braney@hgwdev.cse.ucsc.edu:/data/git/kent
• Matt Weirauch's TFBS for hg19... yay Matt!
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 13, context: html, text, full: html, text
• Merge branch 'master' of braney@hgwdev.cse.ucsc.edu:/data/git/kent
• GisChiaPet metadata
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/makefile - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGisChiaPet.ra - lines changed 2208, context: html, text, full: html, text
• Merge branch 'master' of braney@hgwdev.cse.ucsc.edu:/data/git/kent
• add some code to draw snakes which will be used to draw Benedict's cactus graphs in ancestrla root browsers
  • src/hg/hgTracks/makefile - lines changed 1, context: html, text, full: html, text
  • src/hg/hgTracks/simpleTracks.c - lines changed 4, context: html, text, full: html, text
  • src/hg/hgTracks/snakeTrack.c - lines changed 917, context: html, text, full: html, text
• oops... snake stuff that should have been in the earlier commit
  • src/hg/hgTracks/hgTracks.h - lines changed 4, context: html, text, full: html, text
• add snake type, will be used to display Benedict's cactus graphs on the root ancestor
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 13, context: html, text, full: html, text
• fix up GIS-Ruan, and run type
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 3, context: html, text, full: html, text
• Merge branch 'master' of braney@hgwdev.cse.ucsc.edu:/data/git/kent
• add run field
  • src/hg/encode/encodeValidate/config/fields.ra - lines changed 7, context: html, text, full: html, text
• tag snake track with release alpha
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 1, context: html, text, full: html, text
• Merge branch 'master' of braney@hgwdev.cse.ucsc.edu:/data/git/kent
• change genepred to genePred
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibRnaSeq.ra - lines changed 32, context: html, text, full: html, text
• Merge branch 'master' of braney@hgwdev.cse.ucsc.edu:/data/git/kent
• v247 preview2
  • src/utils/qa/weeklybld/buildEnv.csh - lines changed 2, context: html, text, full: html, text
• Merge branch 'master' of hgwdev:/data/git/kent