Commits for hiram

v247_preview to v247_preview2 (2011-02-01 to 2011-02-08) v247

• document db.socket and db.port variables
  • src/product/ex.hg.conf - lines changed 8, context: html, text, full: html, text
• Merge branch 'master' of hiram@hgwdev.cse.ucsc.edu:/data/git/kent
• now using bigBed as a bedDetail system
  • src/hg/hgc/bigBedClick.c - lines changed 9, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/tagTypes.tab - lines changed 1, context: html, text, full: html, text
• Merge branch 'master' of hiram@hgwdev.cse.ucsc.edu:/data/git/kent
• first version of processing sql files from xml dump from NCBI
  • src/hg/utils/automation/ncbiIncidentDb.pl - lines changed 177, context: html, text, full: html, text
• add DanRer7 to non-self chains list
  • src/hg/makeDb/schema/all.joiner - lines changed 1, context: html, text, full: html, text
• Merge branch 'master' of hiram@hgwdev.cse.ucsc.edu:/data/git/kent
• remove debugging BB labels
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 3, context: html, text, full: html, text
• adding mouse and zebrafish, it is hokey, but it works
  • src/hg/utils/automation/ncbiIncidentDb.pl - lines changed 113, context: html, text, full: html, text
• move ncbiIncidentDb to top level trackDb and document new bigBed option
  • src/hg/makeDb/trackDb/README - lines changed 8, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra - lines changed 11, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/trackDb.ra - lines changed 11, context: html, text, full: html, text
• move ncbiIncidentDb to top level trackDb and document new bigBed option
  • src/hg/makeDb/trackDb/ncbiIncidentDb.html - lines changed 5, context: html, text, full: html, text
• Merge branch 'master' of hiram@hgwdev.cse.ucsc.edu:/data/git/kent
• adjust priority for NCBI Incident track
  • src/hg/makeDb/trackDb/trackDb.ra - lines changed 1, context: html, text, full: html, text
• Merge branch 'master' of hiram@hgwdev.cse.ucsc.edu:/data/git/kent
• adding v61 definitions
  • src/hg/utils/automation/EnsGeneAutomate.pm - lines changed 174, context: html, text, full: html, text
• Merge branch 'master' of hiram@hgwdev.cse.ucsc.edu:/data/git/kent
• finalize the chain/net documentation
  • src/hg/makeDb/trackDb/zebrafish/danRer7/danRer7multipleChainNet.html - lines changed 155, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/zebrafish/danRer7/trackDb.ra - lines changed 3, context: html, text, full: html, text
• Merge branch 'master' of hiram@hgwdev.cse.ucsc.edu:/data/git/kent
• done with v61 ensembl build
  • src/hg/makeDb/doc/makeEnsembl.txt - lines changed 1111, context: html, text, full: html, text
• Merge branch 'master' of hiram@hgwdev.cse.ucsc.edu:/data/git/kent
• .as file definition used to construct bigBed file for this track
  • src/hg/lib/ncbiIncidentDb.as - lines changed 9, context: html, text, full: html, text
• Merge branch 'master' of hiram@hgwdev.cse.ucsc.edu:/data/git/kent