File Changes for cricket

v247_base to v248_preview (2011-02-14 to 2011-02-22) v248

• src/hg/encode/DAFs/2.0/caltechElements.daf
  • lines changed 70, context: html, text, full: html, text
    Added a new set of Elements files
• src/hg/encode/DAFs/2.0/rikenElements.daf
  • lines changed 7, context: html, text, full: html, text
    Added clusters view
• src/hg/encode/autoSql/rnaElements.as
  • lines changed 13, context: html, text, full: html, text
    Creating new format
• src/hg/encode/encodeStatus/encodeStatus.pl
  • lines changed 5, context: html, text, full: html, text
    Added status Revoked
• src/hg/encode/encodeValidate/config/fields.ra
  • lines changed 13, context: html, text, full: html, text
    Adding md5sum and bioRep as fields in fields.ra and md5sum in cv.ra
• src/hg/encode/encodeValidate/doEncodeValidate.pl
  • lines changed 2, context: html, text, full: html, text
    Added bioRep and md5sum as valid fields
• src/hg/makeDb/doc/encodeDccHg19/wgEncodeRikenCage.release1.notes
  • lines changed 77, context: html, text, full: html, text
    New realese notes with dropped data
• src/hg/makeDb/doc/encodeDccHg19/wgEncodeRikenCage.release2.notes
  • lines changed 145, context: html, text, full: html, text
    New realese notes with dropped data
• src/hg/makeDb/trackDb/cv/alpha/cv.ra
  • lines changed 10, context: html, text, full: html, text
    Removed priority from md5sum
  • lines changed 3, context: html, text, full: html, text
    Changed the tag for longNonPolyA to Pam to match Pap
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibMethylRrbs.ra
  • lines changed 3, context: html, text, full: html, text
    Fixed the issues from redmine ticket 2254 note 6
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeRikenCage.ra
  • lines changed 553, context: html, text, full: html, text
    Removing 6 experiments at request of the lab
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSunyAlbanyGeneSt.ra
  • lines changed 127, context: html, text, full: html, text
    Fixed all of the GeneST to GeneSt, hopefully
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSunyGeneST.ra
  • lines changed 475, context: html, text, full: html, text
    Fixed all of the GeneST to GeneSt, hopefully
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCaltechRnaSeq.new.ra
  • lines changed 6, context: html, text, full: html, text
    Changed the Long and Short Labels for Tiling at Kate's request
  • lines changed 214, context: html, text, full: html, text
    Added 4 more submissions, removed the paried label
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCaltechRnaSeq.ra
  • lines changed 1, context: html, text, full: html, text
    Changed Wold to Caltech
  • lines changed 1, context: html, text, full: html, text
    Changed Wold to Caltech
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethyl27.ra
  • lines changed 5, context: html, text, full: html, text
    changed sort order of cells
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylRrbs.new.ra
  • lines changed 9, context: html, text, full: html, text
    Fixed the issues from redmine ticket 2254 note 6
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylRrbs.ra
  • lines changed 1, context: html, text, full: html, text
    maxWindowsToDraw to maxWindowToDraw
  • lines changed 8, context: html, text, full: html, text
    Fixed the issues from redmine ticket 2254 note 6
• src/hg/makeDb/trackDb/human/hg19/wgEncodeRIPSuper.html
  • lines changed 88, context: html, text, full: html, text
    Beginning draft for Melissa
• src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.new.ra
  • lines changed 4, context: html, text, full: html, text
    Changing the maxWindowToDraw setting and the sutoscale and the title
  • lines changed 1, context: html, text, full: html, text
    Changing the maxWindowToDraw setting to very low for the alignments
  • lines changed 180, context: html, text, full: html, text
    Removing 6 experiments at request of the lab
• src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.ra
  • lines changed 4, context: html, text, full: html, text
    Changing the maxWindowToDraw setting and the sutoscale and the title
  • lines changed 1, context: html, text, full: html, text
    Changing the maxWindowToDraw setting to very low for the alignments
  • lines changed 180, context: html, text, full: html, text
    Removing 6 experiments at request of the lab
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSunyAlbanyGeneST.html
  • lines changed 157, context: html, text, full: html, text
    Changed file name so that it matched trackDb.ra
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSunyAlbanyGeneSt.html
  • lines changed 157, context: html, text, full: html, text
    Changed file name so that it matched trackDb.ra
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSunyAlbanyTiling.ra
  • lines changed 2, context: html, text, full: html, text
    Changed the Long and Short Labels for Tiling at Kate's request