Commits for cricket

v247_base to v248_preview (2011-02-14 to 2011-02-22) v248

• Changed file name so that it matched trackDb.ra
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSunyAlbanyGeneST.html - lines changed 157, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSunyAlbanyGeneSt.html - lines changed 157, context: html, text, full: html, text
• Changed Wold to Caltech
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCaltechRnaSeq.ra - lines changed 1, context: html, text, full: html, text
• Changed Wold to Caltech
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCaltechRnaSeq.ra - lines changed 1, context: html, text, full: html, text
• Adding md5sum and bioRep as fields in fields.ra and md5sum in cv.ra
  • src/hg/encode/encodeValidate/config/fields.ra - lines changed 13, context: html, text, full: html, text
• Fixed all of the GeneST to GeneSt, hopefully
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSunyAlbanyGeneSt.ra - lines changed 127, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSunyGeneST.ra - lines changed 475, context: html, text, full: html, text
• changed sort order of cells
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethyl27.ra - lines changed 5, context: html, text, full: html, text
• Removed priority from md5sum
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 10, context: html, text, full: html, text
• Added bioRep and md5sum as valid fields
  • src/hg/encode/encodeValidate/doEncodeValidate.pl - lines changed 2, context: html, text, full: html, text
• Added clusters view
  • src/hg/encode/DAFs/2.0/rikenElements.daf - lines changed 7, context: html, text, full: html, text
• Added a new set of Elements files
  • src/hg/encode/DAFs/2.0/caltechElements.daf - lines changed 70, context: html, text, full: html, text
• Changed the Long and Short Labels for Tiling at Kate's request
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCaltechRnaSeq.new.ra - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSunyAlbanyTiling.ra - lines changed 2, context: html, text, full: html, text
• Added 4 more submissions, removed the paried label
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCaltechRnaSeq.new.ra - lines changed 214, context: html, text, full: html, text
• Beginning draft for Melissa
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeRIPSuper.html - lines changed 88, context: html, text, full: html, text
• Creating new format
  • src/hg/encode/autoSql/rnaElements.as - lines changed 13, context: html, text, full: html, text
• Changing the maxWindowToDraw setting and the sutoscale and the title
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.new.ra - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.ra - lines changed 4, context: html, text, full: html, text
• Changing the maxWindowToDraw setting to very low for the alignments
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.new.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.ra - lines changed 1, context: html, text, full: html, text
• Removing 6 experiments at request of the lab
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeRikenCage.ra - lines changed 553, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.new.ra - lines changed 180, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.ra - lines changed 180, context: html, text, full: html, text
• maxWindowsToDraw to maxWindowToDraw
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylRrbs.ra - lines changed 1, context: html, text, full: html, text
• New realese notes with dropped data
  • src/hg/makeDb/doc/encodeDccHg19/wgEncodeRikenCage.release1.notes - lines changed 77, context: html, text, full: html, text
  • src/hg/makeDb/doc/encodeDccHg19/wgEncodeRikenCage.release2.notes - lines changed 145, context: html, text, full: html, text
• Fixed the issues from redmine ticket 2254 note 6
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibMethylRrbs.ra - lines changed 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylRrbs.new.ra - lines changed 9, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylRrbs.ra - lines changed 8, context: html, text, full: html, text
• Changed the tag for longNonPolyA to Pam to match Pap
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 3, context: html, text, full: html, text
• Added status Revoked
  • src/hg/encode/encodeStatus/encodeStatus.pl - lines changed 5, context: html, text, full: html, text