File Changes for tdreszer

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v249_preview to v249_preview2 (2011-03-15 to 2011-03-22) v249

src/hg/encode/hgEncodeVocab/hgEncodeVocab.c
- lines changed 3, context: html, text, full: html, text
  Fixed bug resulting from 'control' being both a type and a term. Solution: exclude typeOfTerms lookup.
src/hg/hgFileSearch/hgFileSearch.c
- lines changed 123, context: html, text, full: html, text
  Added search for composites by name, desc and group.
- lines changed 1, context: html, text, full: html, text
  Fix bug where search was done before the button was pressed.
src/hg/hgFileUi/hgFileUi.c
- lines changed 8, context: html, text, full: html, text
  Fix floating link to description
src/hg/hgTracks/config.c
- lines changed 65, context: html, text, full: html, text
  Support for downloads only tracks in the config list even when they are not in a supertrack
src/hg/hgTracks/hgTracks.h
- lines changed 5, context: html, text, full: html, text
  Support for downloads only tracks in the config list even when they are not in a supertrack
src/hg/hgTracks/searchTracks.c
- lines changed 4, context: html, text, full: html, text
  Fixed radiobuttons for IE (redmine 3189)
src/hg/inc/encode/encodeExp.h
- lines changed 8, context: html, text, full: html, text
  Support required for mdbPrint/mdbUpdate -encodeExp
src/hg/inc/mdb.h
- lines changed 44, context: html, text, full: html, text
  Integrated mdbPrint/mdbUpdate -encodeExp with the encodeExp APIs.
src/hg/js/hui.js
- lines changed 9, context: html, text, full: html, text
  Minor code cleanup due to debuging nav link problem on hgFileUi.
src/hg/lib/encode/encodeExp.c
- lines changed 127, context: html, text, full: html, text
  Support required for mdbPrint/mdbUpdate -encodeExp
src/hg/lib/fileUi.c
- lines changed 7, context: html, text, full: html, text
  Special case for beta is not an rsync or an htdocs-downloads solution.
- lines changed 3, context: html, text, full: html, text
  Fixed bug with fileFilter link to hgEncodeVocab.
- lines changed 6, context: html, text, full: html, text
  hwdev does rsync now.
src/hg/lib/mdb.c
- lines changed 2, context: html, text, full: html, text
  Needed special case of searchability for composite, since it is not directly searchable but IS indirectly
- lines changed 154, context: html, text, full: html, text
  Integrated mdbPrint/mdbUpdate -encodeExp with the encodeExp APIs.
src/hg/makeDb/doc/encodeDccHg18/broadBernstein.txt
- lines changed 550, context: html, text, full: html, text
  Cheking in wrangling docs from past work. Moved some hg18 stuff to the hg18 doc
src/hg/makeDb/doc/encodeDccHg18/yaleDavisHarvardSnyder.txt
- lines changed 244, context: html, text, full: html, text
  Cheking in wrangling docs from past work. Moved some hg18 stuff to the hg18 doc
src/hg/makeDb/doc/encodeDccHg19/broadHistoneBernstein.hg19.txt
- lines changed 486, context: html, text, full: html, text
  Cheking in wrangling docs from past work. Moved some hg18 stuff to the hg18 doc
- lines changed 183, context: html, text, full: html, text
  Getting impatient on Jason's liftOver.
- lines changed 365, context: html, text, full: html, text
  Late changing stuses from 'reviewing' to 'released'
src/hg/makeDb/doc/encodeDccHg19/openChromCrawford.hg19.txt
- lines changed 664, context: html, text, full: html, text
  Cheking in wrangling docs from past work. Moved some hg18 stuff to the hg18 doc
- lines changed 51, context: html, text, full: html, text
  Late changing stuses from 'reviewing' to 'released'
src/hg/makeDb/mdbUpdate/mdbPrint.c
- lines changed 1, context: html, text, full: html, text
  Integrated mdbPrint/mdbUpdate -encodeExp with the encodeExp APIs.
src/hg/makeDb/mdbUpdate/mdbUpdate.c
- lines changed 8, context: html, text, full: html, text
  Integrated mdbPrint/mdbUpdate -encodeExp with the encodeExp APIs.
src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeChromatinMap.ra
- lines changed 1527, context: html, text, full: html, text
  Removed some obsolete objects (which were replaced by V2s)
src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeUwAffyExonArray.ra
- lines changed 66, context: html, text, full: html, text
  Removed obsolete objs which were replaced by V2s
src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeUwChIPSeq.ra
- lines changed 130, context: html, text, full: html, text
  Removed obsolete objects. There is no H3K4me1 in UW Histone hg18
src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeUwDnaseSeq.ra
- lines changed 312, context: html, text, full: html, text
  Removed obsolete objs which were replaced by V2s
- lines changed 108, context: html, text, full: html, text
  Removed obsolete objects. cell=HIPEpiC and phase=G1 don't exist for hg18 UW Dnase
src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeYaleChIPseq.ra
- lines changed 723, context: html, text, full: html, text
  Finally got around to loading ancient Yale TFBS submissions
src/hg/makeDb/trackDb/human/hg18/wgEncodeBroadHmm.html
- lines changed 6, context: html, text, full: html, text
  Minor changes in anticipation of hg19 lift over.
src/hg/makeDb/trackDb/human/hg18/wgEncodeBroadHmm.ra
- lines changed 17, context: html, text, full: html, text
  Minor changes in anticipation of hg19 lift over.
- lines changed 1, context: html, text, full: html, text
  Sorry. Had wgEncode setting twice. Thanks Angie for finding this.
src/hg/makeDb/trackDb/human/hg18/wgEncodeYaleChIPseq.new.ra
- lines changed 48, context: html, text, full: html, text
  Finally got around to loading 5 ancient submissions.
src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/makefile
- lines changed 1, context: html, text, full: html, text
  Broad HMM has been lifted over from hg18
src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeBroadHmm.ra
- lines changed 163, context: html, text, full: html, text
  Broad HMM has been lifted over from hg18
- lines changed 10, context: html, text, full: html, text
  Fime names are bed not bed9
- lines changed 27, context: html, text, full: html, text
  Jason's liftover of HMM from hg18 is finally here.
src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromChip.ra
- lines changed 115, context: html, text, full: html, text
  And validation docs for 2 cell lines in Open Chrom Chip
src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromDnase.ra
- lines changed 33, context: html, text, full: html, text
  First submission of 1 percent verification data submitted as 'attic by exp' archives
- lines changed 5, context: html, text, full: html, text
  Files are tgz, not doc.gz
src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromFaire.ra
- lines changed 33, context: html, text, full: html, text
  And 1 percent verification for 2 of FAIRE's
src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra
- lines changed 5, context: html, text, full: html, text
  Jason's liftover of HMM from hg18 is finally here.
src/hg/makeDb/trackDb/human/hg19/wgEncodeBroadHmm.html
- lines changed 132, context: html, text, full: html, text
  Jason's liftover of HMM from hg18 is finally here.
src/hg/makeDb/trackDb/human/hg19/wgEncodeBroadHmm.ra
- lines changed 117, context: html, text, full: html, text
  Jason's liftover of HMM from hg18 is finally here.
- lines changed 1, context: html, text, full: html, text
  Fixed filterBy for '_'s.
src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromFaire.html
- lines changed 11, context: html, text, full: html, text
  Zinba is some mythical character that is trapped in hg18 land. No sign of Zinba in hg19
- lines changed 11, context: html, text, full: html, text
  Missed some Zinba voodoo
src/inc/common.h
- lines changed 3, context: html, text, full: html, text
  Added useful function used by text search alogrithm
- lines changed 5, context: html, text, full: html, text
  Added support for turning slPairs list back into string
src/lib/common.c
- lines changed 12, context: html, text, full: html, text
  Added useful function used by text search alogrithm
- lines changed 32, context: html, text, full: html, text
  Added support for turning slPairs list back into string

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