File Changes for cricket

v250_preview2 to v250_base (2011-04-12 to 2011-04-19) v250

• src/hg/encode/DAFs/2.0/cshlLongSpikeIns.daf
  • lines changed 42, context: html, text, full: html, text
    First draft at a DAF for spike-ins
• src/hg/makeDb/trackDb/cv/alpha/cv.ra
  • lines changed 3, context: html, text, full: html, text
    Removed (Wold) from Caltech(Wold) at request of Kate
  • lines changed 1, context: html, text, full: html, text
    Changed Nre to NRE as it is alredy released to public that way
  • lines changed 2, context: html, text, full: html, text
    Trying to fix validation for bioRep and md5sum to get the correct terms
  • lines changed 1, context: html, text, full: html, text
    Removed the verification for bioRep
  • lines changed 189, context: html, text, full: html, text
    Making the changes requested by NHGRI. Everything should be commented out for Melissa's review. Issue 1363
• src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeCaltechRnaSeq.ra
  • lines changed 77, context: html, text, full: html, text
    Removed the false fastq and fasta entries from issue 3046
  • lines changed 284, context: html, text, full: html, text
    Changed the expVars for each of these and got rid of Wold in lab name
• src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeGisDnaPet.ra
  • lines changed 2, context: html, text, full: html, text
    Changed the expVars for each of these and got rid of Wold in lab name
• src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeGisPet.ra
  • lines changed 143, context: html, text, full: html, text
    Removed the false fastq and fasta entries from issue 3046
• src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeHudsonalphaChipSeq.ra
  • lines changed 6, context: html, text, full: html, text
    Changed the expVars for each of these and got rid of Wold in lab name
• src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeHudsonalphaMethylSeq.ra
  • lines changed 2, context: html, text, full: html, text
    Changed the expVars for each of these and got rid of Wold in lab name
• src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeYaleRNAseq.ra
  • lines changed 2, context: html, text, full: html, text
    Updated expVars to not say treatment,treatment
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCaltechRnaSeq.ra
  • lines changed 501, context: html, text, full: html, text
    Removing (Wold) at Kate's request
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibGenotype.ra
  • lines changed 2, context: html, text, full: html, text
    removed obtainedBy from the expVars
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibMethylArray.ra
  • lines changed 2, context: html, text, full: html, text
    Removed obtainedBy from the expVars
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibMethylRrbs.ra
  • lines changed 325, context: html, text, full: html, text
    Ran the renamer to rename all of the files listed in issue 2254. This should be scrutinized.
  • lines changed 2, context: html, text, full: html, text
    Two replicate numbers were swapped. They have been corrected
  • lines changed 89, context: html, text, full: html, text
    More filename changing with the renamer, I also uncommented the attic files to do a test for Galt. They should be recommented soon.
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromChip.ra
  • lines changed 7, context: html, text, full: html, text
    Changed UT-A(Iyer) to UT-A to match the CV
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromDnase.ra
  • lines changed 21, context: html, text, full: html, text
    Removed parentTable
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromFaire.ra
  • lines changed 3, context: html, text, full: html, text
    Changed UNC(Lieb) to UNC to match the CV
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSunyAlbanyGeneSt.ra
  • lines changed 25, context: html, text, full: html, text
    Changed the origAssembly and greyscale and ripTgtProtien according to issue 37
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwDnase.ra
  • lines changed 2, context: html, text, full: html, text
    adding treatment as an experimental variable
• src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.new.ra
  • lines changed 426, context: html, text, full: html, text
    Changing long lables to say whole cell instead of cell, to conform to our new sort order, to say sm in the shortLabel
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylRrbs.new.ra
  • lines changed 148, context: html, text, full: html, text
    Ran the renamer to rename all of the files listed in issue 2254. This should be scrutinized.
  • lines changed 36, context: html, text, full: html, text
    More filename changing with the renamer, I also uncommented the attic files to do a test for Galt. They should be recommented soon.
  • lines changed 27, context: html, text, full: html, text
    Recommented out the attic files
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSunyAlbanyGeneSt.ra
  • lines changed 27, context: html, text, full: html, text
    Changed the origAssembly and greyscale and ripTgtProtien according to issue 37