Commits for cricket

v250_preview2 to v250_base (2011-04-12 to 2011-04-19) v250

• Removed parentTable
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromDnase.ra - lines changed 21, context: html, text, full: html, text
• Removed the false fastq and fasta entries from issue 3046
  • src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeCaltechRnaSeq.ra - lines changed 77, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeGisPet.ra - lines changed 143, context: html, text, full: html, text
• Changed the origAssembly and greyscale and ripTgtProtien according to issue 37
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSunyAlbanyGeneSt.ra - lines changed 25, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSunyAlbanyGeneSt.ra - lines changed 27, context: html, text, full: html, text
• Changed the expVars for each of these and got rid of Wold in lab name
  • src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeCaltechRnaSeq.ra - lines changed 284, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeGisDnaPet.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeHudsonalphaChipSeq.ra - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeHudsonalphaMethylSeq.ra - lines changed 2, context: html, text, full: html, text
• Removed (Wold) from Caltech(Wold) at request of Kate
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 3, context: html, text, full: html, text
• Updated expVars to not say treatment,treatment
  • src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeYaleRNAseq.ra - lines changed 2, context: html, text, full: html, text
• Changed Nre to NRE as it is alredy released to public that way
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 1, context: html, text, full: html, text
• Trying to fix validation for bioRep and md5sum to get the correct terms
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 2, context: html, text, full: html, text
• removed obtainedBy from the expVars
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibGenotype.ra - lines changed 2, context: html, text, full: html, text
• Removing (Wold) at Kate's request
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCaltechRnaSeq.ra - lines changed 501, context: html, text, full: html, text
• Changed UNC(Lieb) to UNC to match the CV
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromFaire.ra - lines changed 3, context: html, text, full: html, text
• Changed UT-A(Iyer) to UT-A to match the CV
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeOpenChromChip.ra - lines changed 7, context: html, text, full: html, text
• adding treatment as an experimental variable
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwDnase.ra - lines changed 2, context: html, text, full: html, text
• First draft at a DAF for spike-ins
  • src/hg/encode/DAFs/2.0/cshlLongSpikeIns.daf - lines changed 42, context: html, text, full: html, text
• Changing long lables to say whole cell instead of cell, to conform to our new sort order, to say sm in the shortLabel
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.new.ra - lines changed 426, context: html, text, full: html, text
• Removed obtainedBy from the expVars
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibMethylArray.ra - lines changed 2, context: html, text, full: html, text
• Removed the verification for bioRep
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 1, context: html, text, full: html, text
• Making the changes requested by NHGRI. Everything should be commented out for Melissa's review. Issue 1363
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 189, context: html, text, full: html, text
• Ran the renamer to rename all of the files listed in issue 2254. This should be scrutinized.
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibMethylRrbs.ra - lines changed 325, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylRrbs.new.ra - lines changed 148, context: html, text, full: html, text
• Two replicate numbers were swapped. They have been corrected
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibMethylRrbs.ra - lines changed 2, context: html, text, full: html, text
• More filename changing with the renamer, I also uncommented the attic files to do a test for Galt. They should be recommented soon.
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibMethylRrbs.ra - lines changed 89, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylRrbs.new.ra - lines changed 36, context: html, text, full: html, text
• Recommented out the attic files
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethylRrbs.new.ra - lines changed 27, context: html, text, full: html, text