File Changes for angie

v249_base to v250_preview (2011-03-29 to 2011-04-05) v250

• src/hg/hgTracks/bamTrack.c
  • lines changed 2, context: html, text, full: html, text
    Code Review #3440 (Jim): removing calls to udcSetCacheTimeout withhardwired time -- hgTracks.c now sets it with cart var + default.
• src/hg/hgTracks/bedTrack.c
  • lines changed 6, context: html, text, full: html, text
    Bugs #3475, #3476 (hgTracks map links messed up for SNPs, omimGene):These were side-effects of my commit a8d97808 Mar. 11, in which I enabled next-prev-exon for all simple beds (which, because they don't have exons/blocks, just means zap-to-edge), instead of only for dbVar where it was requested. It turns out that way too many bed-based tracks with custom drawItems and/or drawItemAt methods are missing something necessary for the nextItem stuff to work. In this fix, instead of hooking up zap-to-edge for all simple bed, I hook it up only to GVF (dbVar/ISCA).
• src/hg/hgTracks/gvfTrack.c
  • lines changed 1, context: html, text, full: html, text
    Bugs #3475, #3476 (hgTracks map links messed up for SNPs, omimGene):These were side-effects of my commit a8d97808 Mar. 11, in which I enabled next-prev-exon for all simple beds (which, because they don't have exons/blocks, just means zap-to-edge), instead of only for dbVar where it was requested. It turns out that way too many bed-based tracks with custom drawItems and/or drawItemAt methods are missing something necessary for the nextItem stuff to work. In this fix, instead of hooking up zap-to-edge for all simple bed, I hook it up only to GVF (dbVar/ISCA).
• src/hg/hgTracks/hgTracks.h
  • lines changed 6, context: html, text, full: html, text
    Bugs #3475, #3476 (hgTracks map links messed up for SNPs, omimGene):These were side-effects of my commit a8d97808 Mar. 11, in which I enabled next-prev-exon for all simple beds (which, because they don't have exons/blocks, just means zap-to-edge), instead of only for dbVar where it was requested. It turns out that way too many bed-based tracks with custom drawItems and/or drawItemAt methods are missing something necessary for the nextItem stuff to work. In this fix, instead of hooking up zap-to-edge for all simple bed, I hook it up only to GVF (dbVar/ISCA).
• src/hg/hgTracks/vcfTrack.c
  • lines changed 2, context: html, text, full: html, text
    Code Review #3440 (Jim): removing calls to udcSetCacheTimeout withhardwired time -- hgTracks.c now sets it with cart var + default.
• src/hg/hgc/hgc.c
  • lines changed 4, context: html, text, full: html, text
    Track #1684 (SNPs 132 (dbSNP)): De-emphasizing dbSNP's "clinically-associated" flag as suggested by Brooke.
• src/hg/makeDb/doc/hg18.txt
  • lines changed 4, context: html, text, full: html, text
    Track #1656 (GWAS Catalog): monthly data update on hgwdev.
• src/hg/makeDb/doc/hg19.txt
  • lines changed 3, context: html, text, full: html, text
    Track #1656 (GWAS Catalog): monthly data update on hgwdev.
• src/hg/makeDb/trackDb/snp132.shared.html
  • lines changed 1, context: html, text, full: html, text
    Track #1684: suggestions from b0b for description html.
• src/hg/makeDb/trackDb/snp132Common.html
  • lines changed 3, context: html, text, full: html, text
    Track #1684: suggestions from b0b for description html.
• src/hg/makeDb/trackDb/snp132NonUnique.html
  • lines changed 2, context: html, text, full: html, text
    Track #1684: suggestions from b0b for description html.
• src/hg/makeDb/trackDb/snp132Patient.html
  • lines changed 2, context: html, text, full: html, text
    Track #1684: suggestions from b0b for description html.