File Changes for galt

v249_base to v250_preview (2011-03-29 to 2011-04-05) v250

• src/hg/hgLiftOver/hgLiftOver.c
  • lines changed 115, context: html, text, full: html, text
    fixing hgLiftOver: grouping and slightly re-ordering options; adding a new section to show what parameters were actually used to display the results, since code currently resets most options to the values in the chain liftOverChains record; also renamed minSizeT to minChainT since that is what it really is, everywhere except liftOverChain.as and the actual db tables and liftOverChain.sql
• src/hg/inc/liftOverChain.h
  • lines changed 1, context: html, text, full: html, text
    fixing hgLiftOver: grouping and slightly re-ordering options; adding a new section to show what parameters were actually used to display the results, since code currently resets most options to the values in the chain liftOverChains record; also renamed minSizeT to minChainT since that is what it really is, everywhere except liftOverChain.as and the actual db tables and liftOverChain.sql
• src/hg/lib/liftOverChain.as
  • lines changed 1, context: html, text, full: html, text
    fixing hgLiftOver: grouping and slightly re-ordering options; adding a new section to show what parameters were actually used to display the results, since code currently resets most options to the values in the chain liftOverChains record; also renamed minSizeT to minChainT since that is what it really is, everywhere except liftOverChain.as and the actual db tables and liftOverChain.sql
• src/hg/lib/liftOverChain.c
  • lines changed 6, context: html, text, full: html, text
    fixing hgLiftOver: grouping and slightly re-ordering options; adding a new section to show what parameters were actually used to display the results, since code currently resets most options to the values in the chain liftOverChains record; also renamed minSizeT to minChainT since that is what it really is, everywhere except liftOverChain.as and the actual db tables and liftOverChain.sql
• src/hg/lib/web.c
  • lines changed 1, context: html, text, full: html, text
    oops %% not to be used with puts(), its not like printf
  • lines changed 2, context: html, text, full: html, text
    fixing with Marks help swapped lines bug
• src/hg/makeDb/hgAddLiftOverChain/hgAddLiftOverChain.c
  • lines changed 7, context: html, text, full: html, text
    renamed minSizeT to minChainT since that is what it really is. Note that the actual database field in liftOverChains table is still has the old name minSizeT.
• src/inc/net.h
  • lines changed 1, context: html, text, full: html, text
    updating paraFetch and paraSync to support -newer option which only downloads newer files, very useful now that the dates are being preserved
  • lines changed 1, context: html, text, full: html, text
    adding progress bar showing filesize, progress, total time, and avg download rate in MB/sec.
• src/lib/net.c
  • lines changed 39, context: html, text, full: html, text
    updating paraFetch and paraSync to support -newer option which only downloads newer files, very useful now that the dates are being preserved
  • lines changed 46, context: html, text, full: html, text
    adding progress bar showing filesize, progress, total time, and avg download rate in MB/sec.
• src/utils/paraFetch/paraFetch.c
  • lines changed 6, context: html, text, full: html, text
    updating paraFetch and paraSync to support -newer option which only downloads newer files, very useful now that the dates are being preserved
  • lines changed 23, context: html, text, full: html, text
    allowing last parameter to be optional, i.e. derived from url if unspecified, as requested by a user
  • lines changed 5, context: html, text, full: html, text
    adding progress bar showing filesize, progress, total time, and avg download rate in MB/sec.
• src/utils/paraSync/paraSync.c
  • lines changed 21, context: html, text, full: html, text
    updating paraFetch and paraSync to support -newer option which only downloads newer files, very useful now that the dates are being preserved
  • lines changed 6, context: html, text, full: html, text
    adding progress bar showing filesize, progress, total time, and avg download rate in MB/sec.