Commits for galt
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v249_base to v250_preview (2011-03-29 to 2011-04-05) v250
- updating paraFetch and paraSync to support -newer option which only downloads newer files, very useful now that the dates are being preserved
- src/utils/paraFetch/paraFetch.c - lines changed 6, context: html, text, full: html, text
- src/utils/paraSync/paraSync.c - lines changed 21, context: html, text, full: html, text
- allowing last parameter to be optional, i.e. derived from url if unspecified, as requested by a user
- src/utils/paraFetch/paraFetch.c - lines changed 23, context: html, text, full: html, text
- oops %% not to be used with puts(), its not like printf
- fixing hgLiftOver: grouping and slightly re-ordering options; adding a new section to show what parameters were actually used to display the results, since code currently resets most options to the values in the chain liftOverChains record; also renamed minSizeT to minChainT since that is what it really is, everywhere except liftOverChain.as and the actual db tables and liftOverChain.sql
- src/hg/hgLiftOver/hgLiftOver.c - lines changed 115, context: html, text, full: html, text
- src/hg/inc/liftOverChain.h - lines changed 1, context: html, text, full: html, text
- src/hg/lib/liftOverChain.as - lines changed 1, context: html, text, full: html, text
- src/hg/lib/liftOverChain.c - lines changed 6, context: html, text, full: html, text
- adding progress bar showing filesize, progress, total time, and avg download rate in MB/sec.
- src/utils/paraFetch/paraFetch.c - lines changed 5, context: html, text, full: html, text
- src/utils/paraSync/paraSync.c - lines changed 6, context: html, text, full: html, text
- renamed minSizeT to minChainT since that is what it really is. Note that the actual database field in liftOverChains table is still has the old name minSizeT.
- src/hg/makeDb/hgAddLiftOverChain/hgAddLiftOverChain.c - lines changed 7, context: html, text, full: html, text
- fixing with Marks help swapped lines bug
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