File Changes for vsmalladi

v249_base to v250_preview (2011-03-29 to 2011-04-05) v250

• src/hg/makeDb/trackDb/cv/alpha/cv.ra
  • lines changed 4, context: html, text, full: html, text
    The IRF4 antibody had a typo in the vendor id. Used SC-6509 instead of SC-6059.
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra
  • lines changed 302, context: html, text, full: html, text
    Removed 13 files and meta-data on advisment from lab. Redmine 3057.
  • lines changed 101, context: html, text, full: html, text
    Updated 40 files with meta-data problems. Redmine 3057.
  • lines changed 633, context: html, text, full: html, text
    Updated 11 experiment set to have correct metaDb of protocols embedded in the file name. Redmine 2731.
  • lines changed 114, context: html, text, full: html, text
    Changed meta-data antibody names and tags to match updated antibody naming schema. Redmine #2897
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra
  • lines changed 115, context: html, text, full: html, text
    Changed meta-data antibody names and tags to match updated antibody naming schema. Redmine #2897
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwHistone.ra
  • lines changed 2, context: html, text, full: html, text
    Fixed error in meta-data for obj wgEncodeUwHistoneK562InputStdRawRep1 to have correct view name RawSignal instead of RawSigna.
• src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra
  • lines changed 2, context: html, text, full: html, text
    Removed alpha tags in trackDb and put alpha tag at composite level in trackDb.wgEncode.ra file. This should fix errors on make beta/public.
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.ra
  • lines changed 705, context: html, text, full: html, text
    Removed alpha tags in trackDb and put alpha tag at composite level in trackDb.wgEncode.ra file. This should fix errors on make beta/public.
  • lines changed 60, context: html, text, full: html, text
    Removed 13 files and meta-data on advisment from lab. Redmine 3057.
  • lines changed 18, context: html, text, full: html, text
    Updated 40 files with meta-data problems. Redmine 3057.
  • lines changed 39, context: html, text, full: html, text
    Updated 11 experiment set to have correct metaDb of protocols embedded in the file name. Redmine 2731.
  • lines changed 151, context: html, text, full: html, text
    Changed meta-data antibody names and tags to match updated antibody naming schema. Redmine #2897
  • lines changed 24, context: html, text, full: html, text
    Forgot to change labels for YY1_(C-20) to new YY1_(SC-281). Redmine 2897.
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhHistone.html
  • lines changed 7, context: html, text, full: html, text
    Added line to state that Signal and Peaks are pooled samples and provided link to download site to get raw data and alignments.
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhHistone.ra
  • lines changed 27, context: html, text, full: html, text
    Removed alpha tags in trackDb and put alpha tag at composite level in trackDb.wgEncode.ra file. This should fix errors on make beta/public.
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.ra
  • lines changed 116, context: html, text, full: html, text
    Changed meta-data antibody names and tags to match updated antibody naming schema. Redmine #2897
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDgf.new.html
  • lines changed 17, context: html, text, full: html, text
    Updated RawSignal windowingFunction from maximum -> mean+whiskers. Removed deafult subtracks on for HotSpots,Peaks and RawSignal so that tracks were not grayed-out with checkboxes selected since views are hidden by default. Also added release 2 notes into html page. All changes address QA changes for redmine issue: #2398, notes: #17.#18.#19.
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDgf.new.ra
  • lines changed 6, context: html, text, full: html, text
    Updated RawSignal windowingFunction from maximum -> mean+whiskers. Removed deafult subtracks on for HotSpots,Peaks and RawSignal so that tracks were not grayed-out with checkboxes selected since views are hidden by default. Also added release 2 notes into html page. All changes address QA changes for redmine issue: #2398, notes: #17.#18.#19.
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeSydhTfbs.ra
  • lines changed 31, context: html, text, full: html, text
    Changed meta-data antibody names and tags to match updated antibody naming schema. Redmine #2897
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodeSydhTfbs.newR2.ra
  • lines changed 13, context: html, text, full: html, text
    Changed meta-data antibody names and tags to match updated antibody naming schema. Redmine #2897