Commits for vsmalladi

v249_base to v250_preview (2011-03-29 to 2011-04-05) v250

• Fixed error in meta-data for obj wgEncodeUwHistoneK562InputStdRawRep1 to have correct view name RawSignal instead of RawSigna.
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwHistone.ra - lines changed 2, context: html, text, full: html, text
• Removed alpha tags in trackDb and put alpha tag at composite level in trackDb.wgEncode.ra file. This should fix errors on make beta/public.
  • src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.ra - lines changed 705, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhHistone.ra - lines changed 27, context: html, text, full: html, text
• Added line to state that Signal and Peaks are pooled samples and provided link to download site to get raw data and alignments.
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhHistone.html - lines changed 7, context: html, text, full: html, text
• Removed 13 files and meta-data on advisment from lab. Redmine 3057.
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra - lines changed 302, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.ra - lines changed 60, context: html, text, full: html, text
• Updated 40 files with meta-data problems. Redmine 3057.
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra - lines changed 101, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.ra - lines changed 18, context: html, text, full: html, text
• Updated 11 experiment set to have correct metaDb of protocols embedded in the file name. Redmine 2731.
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra - lines changed 633, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.ra - lines changed 39, context: html, text, full: html, text
• Merge branch 'Development'
• The IRF4 antibody had a typo in the vendor id. Used SC-6509 instead of SC-6059.
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 4, context: html, text, full: html, text
• Changed meta-data antibody names and tags to match updated antibody naming schema. Redmine #2897
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra - lines changed 114, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 115, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.ra - lines changed 151, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.ra - lines changed 116, context: html, text, full: html, text
• Merge branch 'Development'
• Changed meta-data antibody names and tags to match updated antibody naming schema. Redmine #2897
  • src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 31, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/wgEncodeSydhTfbs.newR2.ra - lines changed 13, context: html, text, full: html, text
• Forgot to change labels for YY1_(C-20) to new YY1_(SC-281). Redmine 2897.
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.ra - lines changed 24, context: html, text, full: html, text
• Updated RawSignal windowingFunction from maximum -> mean+whiskers. Removed deafult subtracks on for HotSpots,Peaks and RawSignal so that tracks were not grayed-out with checkboxes selected since views are hidden by default. Also added release 2 notes into html page. All changes address QA changes for redmine issue: #2398, notes: #17.#18.#19.
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDgf.new.html - lines changed 17, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDgf.new.ra - lines changed 6, context: html, text, full: html, text