Commits for cricket

v250_preview to v250_preview2 (2011-04-05 to 2011-04-12) v250

• Changed Release 2 to Release Notes
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibGenotype.html - lines changed 2, context: html, text, full: html, text
• Added txt files to encodeMkChangeNotes and reran the script to get correct release notes for HaibGenoType
  • src/hg/encode/encodeMkChangeNotes/encodeMkChangeNotes - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/doc/encodeDccHg19/wgEncodeHaibGenotype.release1.notes - lines changed 16, context: html, text, full: html, text
• Reran the script with release 2 replacing release 1. Jeff had run it backwards.
  • src/hg/makeDb/doc/encodeDccHg18/wgEncodeDukeAffyExonArray.release2.notes.txt - lines changed 28, context: html, text, full: html, text
• Long label had two RIP-Chips in it
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSunyAlbanyGeneSt.ra - lines changed 1, context: html, text, full: html, text
• Changing labels, adding dccRep, changing the fileSortOrder, adding Generation 0 to protocolID for early data
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlShortRnaSeq.ra - lines changed 933, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.new.ra - lines changed 107, context: html, text, full: html, text
• Sort the Tier 1 and Tier 2 to the top
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.new.ra - lines changed 179, context: html, text, full: html, text
• Revoking HepG2 experiments, wet lab issues
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlShortRnaSeq.ra - lines changed 596, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.new.ra - lines changed 60, context: html, text, full: html, text
• Changed the colors to swap oragne and red and choose a better orange
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaCnv.new.html - lines changed 2, context: html, text, full: html, text
• Changed orange and red, redmine ticket 3499
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibGenotype.html - lines changed 2, context: html, text, full: html, text
• Changed the order of the color listing Issue 3499 #6
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibGenotype.html - lines changed 2, context: html, text, full: html, text
• Changing according to Issue 1634
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlShortRnaSeq.ra - lines changed 259, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeCshlShortRnaSeq.new.ra - lines changed 507, context: html, text, full: html, text
• Removed old metaData for release 1
  • src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeHudsonalphaCnv.ra - lines changed 52, context: html, text, full: html, text
• Removed old metadata from Release1
• Adding expVars to the metaDb for all composites
  • src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeAffyRnaChip.ra - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeBuOrchid.ra - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeCshlLongRnaSeq.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeCshlShortRnaSeq.ra - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeGisDnaPet.ra - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeGisPet.ra - lines changed 127, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeGisRnaSeq.ra - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeRikenCage.ra - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeSunyalbanyRnaGeneChip.ra - lines changed 6, context: html, text, full: html, text
• Adding md5sums to the metaData, showing with fileSortOrder
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeRikenCage.ra - lines changed 290, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.new.ra - lines changed 1, context: html, text, full: html, text
• Adding expVars to those that were forgotten in the first round
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeAffyRnaChip.ra - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeBuOrchid.ra - lines changed 7, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCaltechRnaSeq.ra - lines changed 2, context: html, text, full: html, text
• A few more expVars added to metaDb
  • src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeHelicosRnaSeq.ra - lines changed 6, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUncBsuProt.ra - lines changed 6, context: html, text, full: html, text
• Changed release tags to be in the include statement
  • src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.ra - lines changed 428, context: html, text, full: html, text
• Changed the treatment IFN*30m to IFN*30 to match the CV
  • src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeYaleRNAseq.ra - lines changed 7, context: html, text, full: html, text