Commits for tdreszer
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v250_preview to v250_preview2 (2011-04-05 to 2011-04-12) v250
- Added in expId and dccAccxession into typeOfTerms as they will soon be added to the mdb. Also labelled Stam grant by his fully unspellable and unpronounceable name
- src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 20, context: html, text, full: html, text
- Tightened the screws on searching by mdb vars where the search is either for files or tables
- src/hg/hgFileSearch/hgFileSearch.c - lines changed 2, context: html, text, full: html, text
- src/hg/hgTracks/searchTracks.c - lines changed 28, context: html, text, full: html, text
- src/hg/inc/searchTracks.h - lines changed 5, context: html, text, full: html, text
- src/hg/lib/searchTracks.c - lines changed 22, context: html, text, full: html, text
- Fixed a type
- src/hg/hgFileUi/hgFileUi.c - lines changed 1, context: html, text, full: html, text
- Renamed lib file searchTracks.c and .h to search.c and .h to avoid conflict with hgTracks file searchTracks.c and to emphasize that this is common code to both track and file seartch.
- src/hg/hgFileSearch/hgFileSearch.c - lines changed 1, context: html, text, full: html, text
- src/hg/hgTracks/searchTracks.c - lines changed 1, context: html, text, full: html, text
- src/hg/inc/searchTracks.h - lines changed 49, context: html, text, full: html, text
- src/hg/lib/searchTracks.c - lines changed 253, context: html, text, full: html, text
- Missed this reference as part of the rename from searchTracks.c to search.h
- Missed a few more references in changing searchTracks.h to search.h
- src/hg/hgGateway/hgGateway.c - lines changed 1, context: html, text, full: html, text
- src/hg/hgTracks/config.c - lines changed 1, context: html, text, full: html, text
- src/hg/hgTracks/hgTracks.c - lines changed 5, context: html, text, full: html, text
- src/hg/hgTracks/mainMain.c - lines changed 2, context: html, text, full: html, text
- Cleaned out some ifdefs and made track search name and description fields work like file search
- src/hg/hgFileSearch/hgFileSearch.c - lines changed 84, context: html, text, full: html, text
- src/hg/hgTracks/searchTracks.c - lines changed 103, context: html, text, full: html, text
- Moved common name and description matching code into search lib and removed it from hgFileSearch and hgTracks/searchTracks.c
- src/hg/hgFileSearch/hgFileSearch.c - lines changed 53, context: html, text, full: html, text
- src/hg/hgTracks/searchTracks.c - lines changed 65, context: html, text, full: html, text
- Changes to validator/loader to tar.gz sets of fastqs and docs, and to support docs that are already tgz's.
- src/hg/encode/encodeLoad/doEncodeLoad.pl - lines changed 74, context: html, text, full: html, text
- src/hg/encode/encodeLoad/doEncodeUnload.pl - lines changed 16, context: html, text, full: html, text
- src/hg/encode/encodeValidate/doEncodeValidate.pl - lines changed 77, context: html, text, full: html, text
- Make fileIndex an implied mdb var as far as file search is concerned.
- expVars should now be official. It is an objType=composite only var.
- src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 11, context: html, text, full: html, text
- Adding in validate setting for expVars
- src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 1, context: html, text, full: html, text
- Added expVars to major DNA composites for hg18
- src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeBroadChipSeq.ra - lines changed 6, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeChromatinMap.ra - lines changed 2, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeHudsonalphaChipSeq.ra - lines changed 6, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeUwChIPSeq.ra - lines changed 6, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeUwDGF.ra - lines changed 6, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeUwDnaseSeq.ra - lines changed 6, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeYaleChIPseq.ra - lines changed 6, context: html, text, full: html, text
- Added in missing expVars into objType=composite
- src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeBroadHmm.ra - lines changed 6, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeDukeAffyExonArray.ra - lines changed 6, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeHudsonalphaCnv.ra - lines changed 6, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeHudsonalphaMethyl27.ra - lines changed 6, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeHudsonalphaMethylSeq.ra - lines changed 6, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeHudsonalphaRnaSeq.ra - lines changed 6, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeMapability.ra - lines changed 6, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeNhgriNRE.ra - lines changed 6, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeUmasshaTfbsValid.ra - lines changed 6, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeUwAffyExonArray.ra - lines changed 6, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeYaleRNAseq.ra - lines changed 6, context: html, text, full: html, text
- Added missing expVars to objType=composite
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeBroadHmm.ra - lines changed 6, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibMethyl27.ra - lines changed 6, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeMapability.ra - lines changed 6, context: html, text, full: html, text
- Adding expVars to the objType=table on this one which does not belong to a composite.
- src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeNhgriBip.ra - lines changed 2, context: html, text, full: html, text
- Get HaibMethyl27 properly renamed to HaibMethylArray
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/makefile - lines changed 1, context: html, text, full: html, text
- Must remove this old file
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibMethyl27.ra - lines changed 1466, context: html, text, full: html, text
- I believe I missed this one earlier.
- src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeHudsonalphaCnv.ra - lines changed 6, context: html, text, full: html, text
- Adjusted encodeExp funtionality to handle compositeless experiments without choking
- src/hg/lib/encode/encodeExp.c - lines changed 2, context: html, text, full: html, text
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