Commits for cricket

v252_preview2 to v252_base (2011-05-31 to 2011-06-07) v252

• Changing the Tam to OHTam as discovered it was registered as the wrong molecule by the lab
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 7, context: html, text, full: html, text
• Added a few missing signals, cleaned up long and short labels, started to prep this for going to QA, see note 6 of issue 2020
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeRikenCage.ra - lines changed 89, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.new.ra - lines changed 763, context: html, text, full: html, text
• Changing the defualts
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.new.ra - lines changed 21, context: html, text, full: html, text
• Changing the metaData as per conversation with Atif, marking as clone-free and clone-based
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGisRnaPet.ra - lines changed 573, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGisRnaPet.ra - lines changed 92, context: html, text, full: html, text
• Adding a term spikeInPool so that we can determine which pool was used
  • src/hg/encode/encodeValidate/config/fields.ra - lines changed 6, context: html, text, full: html, text
• Adding the Exons
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlShortRnaSeq.ra - lines changed 2123, context: html, text, full: html, text
• Renamed fastqs that had a V2 in them due to wrong DAF being used
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCaltechRnaSeq.ra - lines changed 17, context: html, text, full: html, text
• Removed the dateSubmitted1 error
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCaltechRnaSeq.ra - lines changed 149, context: html, text, full: html, text
• Renamed to not have Rep1 when there was really no replicates
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeRikenCage.ra - lines changed 35, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.new.ra - lines changed 6, context: html, text, full: html, text
• Changing the default on off
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.new.ra - lines changed 16, context: html, text, full: html, text
• Added md5sums
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCaltechRnaSeq.ra - lines changed 920, context: html, text, full: html, text
• added the cv validation to View
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 2, context: html, text, full: html, text
• Adding mitochondira
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 7, context: html, text, full: html, text
• Changed the submission directory for the resubmitted data, fixed a comma error and changed the long labels to Kates new format
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUncBsuProt.ra - lines changed 5, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUncBsuProt.ra - lines changed 3, context: html, text, full: html, text
• Took the rep 3 and 4 back out of the attic, I never got confirmation that they should be there
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeDukeAffyExon.ra - lines changed 114, context: html, text, full: html, text