File Changes for fanhsu

v252_preview to v252_preview2 (2011-05-17 to 2011-05-31) v252

• src/hg/hgTrackUi/hgTrackUi.c
  • lines changed 10, context: html, text, full: html, text
    Updated class descriptions for OMIM tracks.
  • lines changed 8, context: html, text, full: html, text
    Minor edits of OMIM tracks configureation language.
• src/hg/hgTracks/simpleTracks.c
  • lines changed 4, context: html, text, full: html, text
    Updated new OMIM related track processing, using the omimPhenotype tale instead of omimDisoroderPhenotype.
  • lines changed 87, context: html, text, full: html, text
    Implemented new color scheme for OMIM tracks.
  • lines changed 1, context: html, text, full: html, text
    Added itemNameColor method for omimGeneLocation track.
• src/hg/hgc/hgc.c
  • lines changed 13, context: html, text, full: html, text
    Updated new OMIM tracks processing to use the new omimPhenotype table.
  • lines changed 92, context: html, text, full: html, text
    Revamped omimGene2 processing logic and minor edits of links to OMIM page at omim.org.
  • lines changed 4, context: html, text, full: html, text
    Show phenotype class for omimGene2.
  • lines changed 2, context: html, text, full: html, text
    Removed target=_blank from refGene and KG links in omimGene2.
• src/hg/lib/mim2gene.as
  • lines changed 7, context: html, text, full: html, text
    Created mim2gene.as.
• src/hg/lib/omimAv.as
  • lines changed 1, context: html, text, full: html, text
    Added comment for description.
• src/hg/lib/omimAvRepl.as
  • lines changed 2, context: html, text, full: html, text
    Added comment for the last two fields.
• src/hg/lib/omimGeneMap.sql
  • lines changed 16, context: html, text, full: html, text
    Updated omimGeneMap.sql.
• src/hg/lib/omimPhenotype.as
  • lines changed 8, context: html, text, full: html, text
    Created omimPhenotype.as
• src/hg/lib/omimPhenotype.sql
  • lines changed 9, context: html, text, full: html, text
    Created omimPhenotype.sql.
• src/hg/makeDb/doc/hg18.txt
  • lines changed 18, context: html, text, full: html, text
    Added evoCpg build.
• src/hg/makeDb/doc/hg19.txt
  • lines changed 193, context: html, text, full: html, text
    Rebuilt new OMIM tracks using new data, new omimPhenotype table, and updated programs.
  • lines changed 1, context: html, text, full: html, text
    Added mimAV.txt to the list of files we get from OMIM.
• src/hg/makeDb/schema/all.joiner
  • lines changed 7, context: html, text, full: html, text
    Updated new OMIM tracks entries.
  • lines changed 4, context: html, text, full: html, text
    Added evoCpgId.
  • lines changed 3, context: html, text, full: html, text
    Added mim2gene entries.
• src/hg/makeDb/trackDb/human/hg18/evoCpg.html
  • lines changed 25, context: html, text, full: html, text
    Added reference section and link to Amos Tanay's lab.
• src/hg/makeDb/trackDb/human/hg18/trackDb.ra
  • lines changed 11, context: html, text, full: html, text
    Added evoCpg.
• src/hg/makeDb/trackDb/human/hg19/omimAvSnp.html
  • lines changed 1, context: html, text, full: html, text
    Added Brooke into Credits section of OMIM tracks.
• src/hg/makeDb/trackDb/human/hg19/omimGene2.html
  • lines changed 9, context: html, text, full: html, text
    Updated description page info on omimGene2.
  • lines changed 12, context: html, text, full: html, text
    Updated class descriptions.
  • lines changed 5, context: html, text, full: html, text
    Updated omimGene2 color scheme.
• src/hg/makeDb/trackDb/human/hg19/omimLocation.html
  • lines changed 2, context: html, text, full: html, text
    Added Brooke into Credits section of OMIM tracks.
  • lines changed 12, context: html, text, full: html, text
    Updated class discriptions of omimLocation.
  • lines changed 6, context: html, text, full: html, text
    Updated color scheme of omimLocation track.
• src/hg/makeDb/trackDb/human/trackDb.ra
  • lines changed 6, context: html, text, full: html, text
    Changed colors for new OMIM Gene tracks.
  • lines changed 6, context: html, text, full: html, text
    Updated default color of OMIM tracks.
• src/hg/oneShot/doOmimDisorders/doOmimDisorders.c
  • lines changed 109, context: html, text, full: html, text
    Created doOmimDisorders.c.
• src/hg/oneShot/doOmimDisorders/makefile
  • lines changed 14, context: html, text, full: html, text
    Created makefile.