File Changes for tdreszer

v253_preview2 to v253_base (2011-06-21 to 2011-06-28) v253

• src/hg/encode/hgEncodeVocab/hgEncodeVocab.c
  • lines changed 14, context: html, text, full: html, text
    As per last weeks code review (note to self), fixed cvNormalize routines to not return values on the stack. Added 'const' to all the cv routines in appropriate places. Kept validateCv compiling even though it is unused. Made hgEncodeVocab use the one true cvFile() call so that it gets the same cv file as other CGIs.
• src/hg/encode/validateCv/validateCv.c
  • lines changed 6, context: html, text, full: html, text
    As per last weeks code review (note to self), fixed cvNormalize routines to not return values on the stack. Added 'const' to all the cv routines in appropriate places. Kept validateCv compiling even though it is unused. Made hgEncodeVocab use the one true cvFile() call so that it gets the same cv file as other CGIs.
• src/hg/hgGene/makefile
  • lines changed 4, context: html, text, full: html, text
    Changed rsync -ar to -aO on Jorge's advice. This eliminates an error when making demo sandboxes.
• src/hg/hgc/makefile
  • lines changed 3, context: html, text, full: html, text
    Changed rsync -ar to -aO on Jorge's advice. This eliminates an error when making demo sandboxes.
• src/hg/inc/cv.h
  • lines changed 16, context: html, text, full: html, text
    As per last weeks code review (note to self), fixed cvNormalize routines to not return values on the stack. Added 'const' to all the cv routines in appropriate places. Kept validateCv compiling even though it is unused. Made hgEncodeVocab use the one true cvFile() call so that it gets the same cv file as other CGIs.
• src/hg/inc/hui.h
  • lines changed 2, context: html, text, full: html, text
    Added support for CSS styles in filterBy drop downs. While this has iffy support in old DDCL, the jquery upgrade should be able to make use of this CSS style.
• src/hg/js/hui.js
  • lines changed 3, context: html, text, full: html, text
    Fix for redmine 4381: subtrack cfg open shouldn't also open metadata.
• src/hg/js/makefile
  • lines changed 2, context: html, text, full: html, text
    Make sure sandboxes get static js files at root of htdocs-{sandbox}/js dir
• src/hg/js/ui.dropdownchecklist.js
  • lines changed 23, context: html, text, full: html, text
    Added support for CSS styles in filterBy drop downs. While this has iffy support in old DDCL, the jquery upgrade should be able to make use of this CSS style.
• src/hg/js/utils.js
  • lines changed 11, context: html, text, full: html, text
    Fix for redmine 4381: subtrack cfg open shouldn't also open metadata.
• src/hg/lib/cv.c
  • lines changed 45, context: html, text, full: html, text
    As per last weeks code review (note to self), fixed cvNormalize routines to not return values on the stack. Added 'const' to all the cv routines in appropriate places. Kept validateCv compiling even though it is unused. Made hgEncodeVocab use the one true cvFile() call so that it gets the same cv file as other CGIs.
• src/hg/lib/encode/encodeExp.c
  • lines changed 1, context: html, text, full: html, text
    As per last weeks code review (note to self), fixed cvNormalize routines to not return values on the stack. Added 'const' to all the cv routines in appropriate places. Kept validateCv compiling even though it is unused. Made hgEncodeVocab use the one true cvFile() call so that it gets the same cv file as other CGIs.
• src/hg/lib/hui.c
  • lines changed 2, context: html, text, full: html, text
    Good idea to specify the db in the link to hgFileUi for downloadable files.
  • lines changed 136, context: html, text, full: html, text
    Added support for CSS styles in filterBy drop downs. While this has iffy support in old DDCL, the jquery upgrade should be able to make use of this CSS style.
  • lines changed 57, context: html, text, full: html, text
    Removed commented out code that was checked in by accident.
• src/hg/makeDb/doc/encodeDccHg19/broadHistoneBernstein.hg19.txt
  • lines changed 4, context: html, text, full: html, text
    A little bit of old notes that should be checked in, in case Matt wants to share this doc.
• src/hg/makeDb/doc/encodeDccHg19/openChromCrawford.hg19.txt
  • lines changed 10, context: html, text, full: html, text
    A little bit of old notes that should be checked in, in case Matt wants to share this doc.
• src/hg/makeDb/hgCgiData/makefile
  • lines changed 4, context: html, text, full: html, text
    Changed rsync -ar to -aO on Jorge's advice. This eliminates an error when making demo sandboxes.
• src/hg/makeDb/trackDb/README
  • lines changed 20, context: html, text, full: html, text
    Added support for CSS styles in filterBy drop downs. While this has iffy support in old DDCL, the jquery upgrade should be able to make use of this CSS style.
• src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra
  • lines changed 13, context: html, text, full: html, text
    The UW Southerns track has been made obsolete. This is experiment level validation data that Venkat will wrangle into the hg18 UW DNase composite.
• src/hg/makeDb/trackDb/human/hg18/wgEncodeBroadHmm.html
  • lines changed 3, context: html, text, full: html, text
    Update the citation which has been published (in Nature) by now.
  • lines changed 3, context: html, text, full: html, text
    Changes to longLabels and description as requested by Katrina. 'Chromatin' Modeling' has been changed to 'Chromatin State Segmentation'
• src/hg/makeDb/trackDb/human/hg18/wgEncodeBroadHmm.ra
  • lines changed 10, context: html, text, full: html, text
    Changing shortLabels from Broad HMM to Broad ChromHMM as per Katrina's request
  • lines changed 10, context: html, text, full: html, text
    Changes to longLabels and description as requested by Katrina. 'Chromatin' Modeling' has been changed to 'Chromatin State Segmentation'
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeMapability.ra
  • lines changed 23, context: html, text, full: html, text
    Straightening out hg19 mapability issues before creating pushQ entry.
• src/hg/makeDb/trackDb/human/hg19/wgEncodeBroadHmm.html
  • lines changed 3, context: html, text, full: html, text
    Update the citation which has been published (in Nature) by now.
  • lines changed 3, context: html, text, full: html, text
    Changes to longLabels and description as requested by Katrina. 'Chromatin' Modeling' has been changed to 'Chromatin State Segmentation'
• src/hg/makeDb/trackDb/human/hg19/wgEncodeBroadHmm.ra
  • lines changed 10, context: html, text, full: html, text
    Changing shortLabels from Broad HMM to Broad ChromHMM as per Katrina's request
  • lines changed 10, context: html, text, full: html, text
    Changes to longLabels and description as requested by Katrina. 'Chromatin' Modeling' has been changed to 'Chromatin State Segmentation'
• src/hg/makeDb/trackDb/human/hg19/wgEncodeMapability.new.ra
  • lines changed 5, context: html, text, full: html, text
    Added 'ENCODE' to the composite longLabel to make it more prominent.
• src/hg/near/hgNear/makefile
  • lines changed 4, context: html, text, full: html, text
    Changed rsync -ar to -aO on Jorge's advice. This eliminates an error when making demo sandboxes.