Commits for tdreszer
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v253_preview2 to v253_base (2011-06-21 to 2011-06-28) v253
- A little bit of old notes that should be checked in, in case Matt wants to share this doc.
- src/hg/makeDb/doc/encodeDccHg19/broadHistoneBernstein.hg19.txt - lines changed 4, context: html, text, full: html, text
- src/hg/makeDb/doc/encodeDccHg19/openChromCrawford.hg19.txt - lines changed 10, context: html, text, full: html, text
- Fix for redmine 4381: subtrack cfg open shouldn't also open metadata.
- Good idea to specify the db in the link to hgFileUi for downloadable files.
- Changed rsync -ar to -aO on Jorge's advice. This eliminates an error when making demo sandboxes.
- src/hg/makeDb/hgCgiData/makefile - lines changed 4, context: html, text, full: html, text
- src/hg/near/hgNear/makefile - lines changed 4, context: html, text, full: html, text
- Update the citation which has been published (in Nature) by now.
- src/hg/makeDb/trackDb/human/hg18/wgEncodeBroadHmm.html - lines changed 3, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeBroadHmm.html - lines changed 3, context: html, text, full: html, text
- Changing shortLabels from Broad HMM to Broad ChromHMM as per Katrina's request
- src/hg/makeDb/trackDb/human/hg18/wgEncodeBroadHmm.ra - lines changed 10, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeBroadHmm.ra - lines changed 10, context: html, text, full: html, text
- Changes to longLabels and description as requested by Katrina. 'Chromatin' Modeling' has been changed to 'Chromatin State Segmentation'
- src/hg/makeDb/trackDb/human/hg18/wgEncodeBroadHmm.html - lines changed 3, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg18/wgEncodeBroadHmm.ra - lines changed 10, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeBroadHmm.html - lines changed 3, context: html, text, full: html, text
- src/hg/makeDb/trackDb/human/hg19/wgEncodeBroadHmm.ra - lines changed 10, context: html, text, full: html, text
- Make sure sandboxes get static js files at root of htdocs-{sandbox}/js dir
- As per last weeks code review (note to self), fixed cvNormalize routines to not return values on the stack. Added 'const' to all the cv routines in appropriate places. Kept validateCv compiling even though it is unused. Made hgEncodeVocab use the one true cvFile() call so that it gets the same cv file as other CGIs.
- src/hg/encode/hgEncodeVocab/hgEncodeVocab.c - lines changed 14, context: html, text, full: html, text
- src/hg/encode/validateCv/validateCv.c - lines changed 6, context: html, text, full: html, text
- src/hg/lib/encode/encodeExp.c - lines changed 1, context: html, text, full: html, text
- Added support for CSS styles in filterBy drop downs. While this has iffy support in old DDCL, the jquery upgrade should be able to make use of this CSS style.
- src/hg/js/ui.dropdownchecklist.js - lines changed 23, context: html, text, full: html, text
- src/hg/makeDb/trackDb/README - lines changed 20, context: html, text, full: html, text
- Removed commented out code that was checked in by accident.
- Straightening out hg19 mapability issues before creating pushQ entry.
- src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeMapability.ra - lines changed 23, context: html, text, full: html, text
- Added 'ENCODE' to the composite longLabel to make it more prominent.
- src/hg/makeDb/trackDb/human/hg19/wgEncodeMapability.new.ra - lines changed 5, context: html, text, full: html, text
- The UW Southerns track has been made obsolete. This is experiment level validation data that Venkat will wrangle into the hg18 UW DNase composite.
- src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra - lines changed 13, context: html, text, full: html, text
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