File Changes for katrina

v252_base to v253_preview (2011-06-07 to 2011-06-14) v253

• src/hg/htdocs/ENCODE/downloads.html
  • lines changed 3, context: html, text, full: html, text
    adding Open Chrom Synth, redmine 2881
• src/hg/makeDb/trackDb/human/hg18/metaDb/beta/wgEncodeDukeAffyExonArray.ra
  • lines changed 132, context: html, text, full: html, text
    releasing Release 2 of hg18 Duke Affy Exon track; dropped 4 subtracks (lhsr) and added experiment ids, redmine #2199
• src/hg/makeDb/trackDb/human/hg18/metaDb/beta/wgEncodeHudsonalphaCnv.ra
  • lines changed 18, context: html, text, full: html, text
    releasing metadata update (CNV->Genotype & adding expIds), pqId 85
• src/hg/makeDb/trackDb/human/hg18/metaDb/beta/wgEncodeHudsonalphaMethyl27.ra
  • lines changed 24, context: html, text, full: html, text
    releasing metadata update (including adding expIds), pqId 86
• src/hg/makeDb/trackDb/human/hg18/metaDb/beta/wgEncodeNhgriBip.ra
  • lines changed 4, context: html, text, full: html, text
    releasing metadata update (including adding expIds), pqId 87
• src/hg/makeDb/trackDb/human/hg18/metaDb/beta/wgEncodeNhgriNRE.ra
  • lines changed 14, context: html, text, full: html, text
    releasing metadata update (including adding expIds), pqId 87
• src/hg/makeDb/trackDb/human/hg18/metaDb/public/wgEncodeDukeAffyExonArray.ra
  • lines changed 132, context: html, text, full: html, text
    releasing Release 2 of hg18 Duke Affy Exon track; dropped 4 subtracks (lhsr) and added experiment ids, redmine #2199
• src/hg/makeDb/trackDb/human/hg18/metaDb/public/wgEncodeHudsonalphaCnv.ra
  • lines changed 18, context: html, text, full: html, text
    releasing metadata update (CNV->Genotype & adding expIds), pqId 85
• src/hg/makeDb/trackDb/human/hg18/metaDb/public/wgEncodeHudsonalphaMethyl27.ra
  • lines changed 24, context: html, text, full: html, text
    releasing metadata update (including adding expIds), pqId 86
• src/hg/makeDb/trackDb/human/hg18/metaDb/public/wgEncodeNhgriBip.ra
  • lines changed 4, context: html, text, full: html, text
    releasing metadata update (including adding expIds), pqId 87
• src/hg/makeDb/trackDb/human/hg18/metaDb/public/wgEncodeNhgriNRE.ra
  • lines changed 14, context: html, text, full: html, text
    releasing metadata update (including adding expIds), pqId 87
• src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra
  • lines changed 2, context: html, text, full: html, text
    releasing Release 2 of hg18 Duke Affy Exon track; dropped 4 subtracks (lhsr) and added experiment ids, redmine #2199
• src/hg/makeDb/trackDb/human/hg18/wgEncodeDukeAffyExon.ra
  • lines changed 29, context: html, text, full: html, text
    releasing Release 2 of hg18 Duke Affy Exon track; dropped 4 subtracks (lhsr) and added experiment ids, redmine #2199
• src/hg/makeDb/trackDb/human/hg18/wgEncodeDukeAffyExonArray.html
  • lines changed 13, context: html, text, full: html, text
    releasing Release 2 of hg18 Duke Affy Exon track; dropped 4 subtracks (lhsr) and added experiment ids, redmine #2199
• src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeAffyRnaChip.ra
  • lines changed 1091, context: html, text, full: html, text
    releasing updated metadata (extraneous entries removed, addition of ucscId) and addition of filesortorder
• src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeGisDnaPet.ra
  • lines changed 588, context: html, text, full: html, text
    releasing geo accessions, ucsc accessions, fileSortOrder, and metadata for fasta, fastq and csqual download files
• src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeGisRnaSeq.ra
  • lines changed 92, context: html, text, full: html, text
    releasing metadata updates for GIS RNA-seq (hg19), pushQ id 92
• src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeOpenChromSynth.ra
  • lines changed 16, context: html, text, full: html, text
    staging update to metadat on beta, redmine #2881
• src/hg/makeDb/trackDb/human/hg19/metaDb/beta/wgEncodeSunyAlbanyTiling.ra
  • lines changed 14, context: html, text, full: html, text
    updating metadata: RipChip changed to RipTiliing
• src/hg/makeDb/trackDb/human/hg19/metaDb/public/makefile
  • lines changed 1, context: html, text, full: html, text
    preparing metadata for Open Chrom Synth track release, redmine 2881
• src/hg/makeDb/trackDb/human/hg19/metaDb/public/wgEncodeAffyRnaChip.ra
  • lines changed 1091, context: html, text, full: html, text
    releasing updated metadata (extraneous entries removed, addition of ucscId) and addition of filesortorder
• src/hg/makeDb/trackDb/human/hg19/metaDb/public/wgEncodeGisDnaPet.ra
  • lines changed 588, context: html, text, full: html, text
    releasing geo accessions, ucsc accessions, fileSortOrder, and metadata for fasta, fastq and csqual download files
• src/hg/makeDb/trackDb/human/hg19/metaDb/public/wgEncodeGisRnaSeq.ra
  • lines changed 92, context: html, text, full: html, text
    releasing metadata updates for GIS RNA-seq (hg19), pushQ id 92
• src/hg/makeDb/trackDb/human/hg19/metaDb/public/wgEncodeOpenChromSynth.ra
  • lines changed 146, context: html, text, full: html, text
    preparing metadata for Open Chrom Synth track release, redmine 2881
• src/hg/makeDb/trackDb/human/hg19/metaDb/public/wgEncodeSunyAlbanyTiling.ra
  • lines changed 14, context: html, text, full: html, text
    updating metadata: RipChip changed to RipTiliing
• src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra
  • lines changed 2, context: html, text, full: html, text
    releasing geo accessions, ucsc accessions, fileSortOrder, and metadata for fasta, fastq and csqual download files
  • lines changed 2, context: html, text, full: html, text
    releasing updated metadata (extraneous entries removed, addition of ucscId) and addition of filesortorder
  • lines changed 2, context: html, text, full: html, text
    releasing metadata updates for GIS RNA-seq (hg19), pushQ id 92
• src/hg/makeDb/trackDb/human/hg19/wgEncodeAffyRnaChip.ra
  • lines changed 1, context: html, text, full: html, text
    releasing updated metadata (extraneous entries removed, addition of ucscId) and addition of filesortorder
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGisDnaPet.ra
  • lines changed 1, context: html, text, full: html, text
    releasing file sort order
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGisRnaSeq.ra
  • lines changed 1, context: html, text, full: html, text
    releasing metadata updates for GIS RNA-seq (hg19), pushQ id 92
• src/hg/makeDb/trackDb/human/hg19/wgEncodeOpenChromSynth.html
  • lines changed 10, context: html, text, full: html, text
    adding log -10 equivalents to p-values that were missing it, redmine #2881
• src/hg/makeDb/trackDb/human/hg19/wgEncodeRbpSuper.html
  • lines changed 28, context: html, text, full: html, text
    releasing the revised RbpSupertrack html, redmine 460