File Changes for angie

v254_preview2 to v254_base (2011-07-12 to 2011-07-19) v254

• src/hg/htdocs/Neandertal/index.html
  • lines changed 77, context: html, text, full: html, text
    MLQ #4480: Adding links to hg19 download files to the Neandertal portalpage, since Brooke noticed they were missing.
• src/hg/lib/pgSnp.c
  • lines changed 1, context: html, text, full: html, text
    MLQ #4606: user found that a two-base deletion was not recognized asa frameshift by pgSnp hgc handler. Fix: since dnaseq.c's translateSeq returns a protein with empty sequence if the input is less than 3 bases (like "-G"), check for emtpy sequence. I kind of wonder if translateSeq should return "X" if the input is 1 or 2 bases...?
• src/lib/tests/makefile
  • lines changed 4, context: html, text, full: html, text
    Adding target for udcTest in lib/tests, but *not* hooking it up totop-level "make test". Also adding udcTrials.csh that runs udcTest many times interspersed w/sleeps.
• src/lib/tests/udcTrials.csh
  • lines changed 15, context: html, text, full: html, text
    Adding target for udcTest in lib/tests, but *not* hooking it up totop-level "make test". Also adding udcTrials.csh that runs udcTest many times interspersed w/sleeps.