File Changes for braney

v253_base to v254_preview (2011-06-28 to 2011-07-05) v254

• src/hg/hgTracks/simpleTracks.c
  • lines changed 2, context: html, text, full: html, text
    fix filtering for Gencode tracks (#2608)
• src/hg/makeDb/genbank/etc/genbank.conf
  • lines changed 16, context: html, text, full: html, text
    Added allMis0 (preliminary alligator )
  • lines changed 1, context: html, text, full: html, text
    need a lift for allMiss0
  • lines changed 1, context: html, text, full: html, text
    no per chrom tables for allMis0
• src/hg/makeDb/genbank/src/lib/gbGenome.c
  • lines changed 2, context: html, text, full: html, text
    add alligator
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/makefile
  • lines changed 2, context: html, text, full: html, text
    restoring V4 metadata, labeling Gencode composites with V?, #2608
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGencode.ra
  • lines changed 26, context: html, text, full: html, text
    dropped dataVersion per Venkat #2608
  • lines changed 26, context: html, text, full: html, text
    added objType per Cricket (#2608)
  • lines changed 27, context: html, text, full: html, text
    restoring V4 metadata, labeling Gencode composites with V?, #2608
  • lines changed 371, context: html, text, full: html, text
    moving all Gencode metadata to files with the V? suffix
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGencodeV4.ra
  • lines changed 98, context: html, text, full: html, text
    move gencodeV4 metadata to properly named file, #2608
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGencodeV7.ra
  • lines changed 371, context: html, text, full: html, text
    is slowly getting this to work ;-)
  • lines changed 181, context: html, text, full: html, text
    fixes per #2608
• src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra
  • lines changed 1, context: html, text, full: html, text
    take GencodeV5 off of alpha
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV4.new.ra
  • lines changed 1, context: html, text, full: html, text
    restoring V4 metadata, labeling Gencode composites with V?, #2608
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV7.html
  • lines changed 9, context: html, text, full: html, text
    put references in alphabetical order
• src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV7.ra
  • lines changed 13, context: html, text, full: html, text
    fixes per Venkat #2608
  • lines changed 7, context: html, text, full: html, text
    restoring V4 metadata, labeling Gencode composites with V?, #2608
  • lines changed 16, context: html, text, full: html, text
    fixes per #2608
• src/hg/makefile
  • lines changed 1, context: html, text, full: html, text
    add hgHubConnect to CGI build
• src/utils/qa/weeklybld/buildEnv.csh
  • lines changed 2, context: html, text, full: html, text
    v254 preview1