Commits for braney

v253_base to v254_preview (2011-06-28 to 2011-07-05) v254

• fixes per Venkat #2608
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV7.ra - lines changed 13, context: html, text, full: html, text
• put references in alphabetical order
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV7.html - lines changed 9, context: html, text, full: html, text
• dropped dataVersion per Venkat #2608
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGencode.ra - lines changed 26, context: html, text, full: html, text
• added objType per Cricket (#2608)
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGencode.ra - lines changed 26, context: html, text, full: html, text
• Added allMis0 (preliminary alligator )
  • src/hg/makeDb/genbank/etc/genbank.conf - lines changed 16, context: html, text, full: html, text
• add alligator
  • src/hg/makeDb/genbank/src/lib/gbGenome.c - lines changed 2, context: html, text, full: html, text
• need a lift for allMiss0
  • src/hg/makeDb/genbank/etc/genbank.conf - lines changed 1, context: html, text, full: html, text
• restoring V4 metadata, labeling Gencode composites with V?, #2608
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/makefile - lines changed 2, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGencode.ra - lines changed 27, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV4.new.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV7.ra - lines changed 7, context: html, text, full: html, text
• move gencodeV4 metadata to properly named file, #2608
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGencodeV4.ra - lines changed 98, context: html, text, full: html, text
• is slowly getting this to work ;-)
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGencodeV7.ra - lines changed 371, context: html, text, full: html, text
• fix filtering for Gencode tracks (#2608)
  • src/hg/hgTracks/simpleTracks.c - lines changed 2, context: html, text, full: html, text
• moving all Gencode metadata to files with the V? suffix
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGencode.ra - lines changed 371, context: html, text, full: html, text
• fixes per #2608
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGencodeV7.ra - lines changed 181, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeGencodeV7.ra - lines changed 16, context: html, text, full: html, text
• take GencodeV5 off of alpha
  • src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra - lines changed 1, context: html, text, full: html, text
• no per chrom tables for allMis0
  • src/hg/makeDb/genbank/etc/genbank.conf - lines changed 1, context: html, text, full: html, text
• add hgHubConnect to CGI build
  • src/hg/makefile - lines changed 1, context: html, text, full: html, text
• v254 preview1
  • src/utils/qa/weeklybld/buildEnv.csh - lines changed 2, context: html, text, full: html, text