File Changes for cricket

v253_base to v254_preview (2011-06-28 to 2011-07-05) v254

• src/hg/encode/DAFs/2.0/haibMethyl450.daf
  • lines changed 40, context: html, text, full: html, text
    New Daf for new data type
• src/hg/encode/encodeValidate/config/fields.ra
  • lines changed 6, context: html, text, full: html, text
    Adding obtainedBy, not sure why validate does not work without it
• src/hg/makeDb/doc/encodeDccHg19/wgEncodeHaibGenotype.release1.notes
  • lines changed 4, context: html, text, full: html, text
    Changeing the notes file to move the supplemental files from the files section to the other section
• src/hg/makeDb/trackDb/cv/alpha/cv.ra
  • lines changed 1, context: html, text, full: html, text
    adding institution to USC
  • lines changed 6, context: html, text, full: html, text
    making some label changes for Kate to match NHGRI
• src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeHudsonalphaChipSeq.ra
  • lines changed 48, context: html, text, full: html, text
    Putting the expVars in matching order for hg18 and hg19
  • lines changed 29, context: html, text, full: html, text
    Trying to fix the HTB-11 goes to SK-N-SH issue and consolidate the Control versus Input issue to all control
• src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeSangerGencode.ra
  • lines changed 12, context: html, text, full: html, text
    Added experiment id
• src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeYaleChIPseq.ra
  • lines changed 3, context: html, text, full: html, text
    This one replicate had the wrong metaData
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/makefile
  • lines changed 1, context: html, text, full: html, text
    Adding a new composite subId 4444 and redmine ticket 4234
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlShortRnaSeq.ra
  • lines changed 30, context: html, text, full: html, text
    Fixing the ExonGencV3c to ExonsGencV3c
  • lines changed 2, context: html, text, full: html, text
    Error in dataType, ShortRnaSeq to RnaSeq
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGencode.ra
  • lines changed 52, context: html, text, full: html, text
    adding expIds and changing the expVars to reflect
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGencodeV4.ra
  • lines changed 14, context: html, text, full: html, text
    adding dccAccessions
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGencodeV7.ra
  • lines changed 36, context: html, text, full: html, text
    adding dccAccessions
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibGenotype.ra
  • lines changed 2, context: html, text, full: html, text
    Changing Cnv to Genotype
  • lines changed 30, context: html, text, full: html, text
    Moving the Ballele and Gtype to be supplemental data, it is leaving the mdb
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibMethyl450.ra
  • lines changed 248, context: html, text, full: html, text
    Adding a new composite subId 4444 and redmine ticket 4234
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra
  • lines changed 2, context: html, text, full: html, text
    Putting the expVars in matching order for hg18 and hg19
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUw5C.ra
  • lines changed 1, context: html, text, full: html, text
    adding required dataType to the expVars
• src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra
  • lines changed 1, context: html, text, full: html, text
    This went with the previous commit to add the composite Methyl450, I had forgotten to add to the trackDb.wgEncode.ra. I also cleaned up a few things in fileSortOrder and sortOrder.
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibGenotype.html
  • lines changed 1, context: html, text, full: html, text
    Moving the Ballele and Gtype to be supplemental data, it is leaving the mdb
  • lines changed 1, context: html, text, full: html, text
    Changing the links to go exactly to the supplemental materails directory
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethyl450.ra
  • lines changed 136, context: html, text, full: html, text
    Adding a new composite subId 4444 and redmine ticket 4234
  • lines changed 6, context: html, text, full: html, text
    This went with the previous commit to add the composite Methyl450, I had forgotten to add to the trackDb.wgEncode.ra. I also cleaned up a few things in fileSortOrder and sortOrder.
• src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.new.ra
  • lines changed 30, context: html, text, full: html, text
    Changing defualts, setting the extrafields