Commits for cricket

v253_base to v254_preview (2011-06-28 to 2011-07-05) v254

• This one replicate had the wrong metaData
  • src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeYaleChIPseq.ra - lines changed 3, context: html, text, full: html, text
• Fixing the ExonGencV3c to ExonsGencV3c
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlShortRnaSeq.ra - lines changed 30, context: html, text, full: html, text
• New Daf for new data type
  • src/hg/encode/DAFs/2.0/haibMethyl450.daf - lines changed 40, context: html, text, full: html, text
• Changing Cnv to Genotype
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibGenotype.ra - lines changed 2, context: html, text, full: html, text
• Changing defualts, setting the extrafields
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeRikenCage.new.ra - lines changed 30, context: html, text, full: html, text
• Putting the expVars in matching order for hg18 and hg19
  • src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeHudsonalphaChipSeq.ra - lines changed 48, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra - lines changed 2, context: html, text, full: html, text
• adding institution to USC
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 1, context: html, text, full: html, text
• Added experiment id
  • src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeSangerGencode.ra - lines changed 12, context: html, text, full: html, text
• adding expIds and changing the expVars to reflect
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGencode.ra - lines changed 52, context: html, text, full: html, text
• making some label changes for Kate to match NHGRI
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 6, context: html, text, full: html, text
• Error in dataType, ShortRnaSeq to RnaSeq
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCshlShortRnaSeq.ra - lines changed 2, context: html, text, full: html, text
• Moving the Ballele and Gtype to be supplemental data, it is leaving the mdb
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibGenotype.ra - lines changed 30, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibGenotype.html - lines changed 1, context: html, text, full: html, text
• Adding obtainedBy, not sure why validate does not work without it
  • src/hg/encode/encodeValidate/config/fields.ra - lines changed 6, context: html, text, full: html, text
• Changeing the notes file to move the supplemental files from the files section to the other section
  • src/hg/makeDb/doc/encodeDccHg19/wgEncodeHaibGenotype.release1.notes - lines changed 4, context: html, text, full: html, text
• Trying to fix the HTB-11 goes to SK-N-SH issue and consolidate the Control versus Input issue to all control
  • src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeHudsonalphaChipSeq.ra - lines changed 29, context: html, text, full: html, text
• adding required dataType to the expVars
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUw5C.ra - lines changed 1, context: html, text, full: html, text
• adding dccAccessions
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGencodeV4.ra - lines changed 14, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeGencodeV7.ra - lines changed 36, context: html, text, full: html, text
• Adding a new composite subId 4444 and redmine ticket 4234
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/makefile - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibMethyl450.ra - lines changed 248, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethyl450.ra - lines changed 136, context: html, text, full: html, text
• This went with the previous commit to add the composite Methyl450, I had forgotten to add to the trackDb.wgEncode.ra. I also cleaned up a few things in fileSortOrder and sortOrder.
  • src/hg/makeDb/trackDb/human/hg19/trackDb.wgEncode.ra - lines changed 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibMethyl450.ra - lines changed 6, context: html, text, full: html, text
• Changing the links to go exactly to the supplemental materails directory
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibGenotype.html - lines changed 1, context: html, text, full: html, text