Commits for kate

v253_base to v254_preview (2011-06-28 to 2011-07-05) v254

• Add Matt
  • src/hg/htdocs/ENCODE/contacts.html - lines changed 3, context: html, text, full: html, text
• Fix to use correct blue bar (not the special one for the Data Policy page)
  • src/hg/htdocs/ENCODE/dataPlansMouse.html - lines changed 1, context: html, text, full: html, text
  • src/hg/htdocs/ENCODE/dataSummary.html - lines changed 1, context: html, text, full: html, text
  • src/hg/htdocs/ENCODE/dataSummaryMouse.html - lines changed 1, context: html, text, full: html, text
  • src/hg/htdocs/ENCODE/downloads.html - lines changed 2, context: html, text, full: html, text
  • src/hg/htdocs/ENCODE/downloadsMouse.html - lines changed 8, context: html, text, full: html, text
  • src/hg/htdocs/ENCODE/search.html - lines changed 1, context: html, text, full: html, text
• Add Preview browser link to top blue bar for ENCODE static pages
  • src/hg/htdocs/inc/encode.topbar.html - lines changed 4, context: html, text, full: html, text
• Add links (just dummy for now) to preview browser in trackUI
  • src/hg/hgTrackUi/hgTrackUi.c - lines changed 4, context: html, text, full: html, text
  • src/hg/lib/hui.c - lines changed 5, context: html, text, full: html, text
• Activate preview browser links on track UI
  • src/hg/hgTrackUi/hgTrackUi.c - lines changed 3, context: html, text, full: html, text
  • src/hg/lib/hui.c - lines changed 4, context: html, text, full: html, text
• Changes after review by Katrina -- remove ENCODE top link on trackUi, instead link to image, etc.
  • src/hg/hgTrackUi/hgTrackUi.c - lines changed 5, context: html, text, full: html, text
  • src/hg/htdocs/ENCODE/index.html - lines changed 1, context: html, text, full: html, text
  • src/hg/lib/hui.c - lines changed 9, context: html, text, full: html, text
• Merge branch 'master' into preview
• Cosmetics on ENCODE track UI
  • src/hg/hgTrackUi/hgTrackUi.c - lines changed 1, context: html, text, full: html, text
  • src/hg/lib/hui.c - lines changed 3, context: html, text, full: html, text
• Merge branch 'preview'
• Add RNA-seq doc to standards page
  • src/hg/htdocs/ENCODE/dataStandards.html - lines changed 14, context: html, text, full: html, text
• Merge branch 'master' into rnaStandard
• Some preliminary exp ID fishing. This version in use Apr 13 - late June
  • src/hg/encode/encodeReport/encodeReport.pl - lines changed 86, context: html, text, full: html, text
• Use experiment-defining variables from MDB and experiment table
  • src/hg/encode/encodeReport/encodeReport.pl - lines changed 97, context: html, text, full: html, text
• Go to extreme lengths to locate release date
  • src/hg/encode/encodeReport/encodeReport.pl - lines changed 38, context: html, text, full: html, text
• Preserve age and strain
  • src/hg/encode/encodeReport/encodeReport.pl - lines changed 3, context: html, text, full: html, text
• Exclude objects in composites w/o expVars. Including them added spurious Caltech submissions from the ENCODE Reg track
  • src/hg/encode/encodeReport/encodeReport.pl - lines changed 4, context: html, text, full: html, text
• Fix xxx### broken link
  • src/hg/htdocs/ENCODE/dataStandards.html - lines changed 1, context: html, text, full: html, text