File Changes for wong

v253_base to v254_preview (2011-06-28 to 2011-07-05) v254

• src/hg/makeDb/doc/encodeDccHg19/wgEncodeSydhNsome.release1.notes
  • lines changed 186, context: html, text, full: html, text
    Sydh Nucleosome release1 notes added
  • lines changed 192, context: html, text, full: html, text
    error in generating the notes files, regenerated
• src/hg/makeDb/trackDb/cv/alpha/cv.ra
  • lines changed 1, context: html, text, full: html, text
    corrected gata3 sc269's tag
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCaltechRnaSeq.ra
  • lines changed 243, context: html, text, full: html, text
    repaired orig assembly where needed
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibGenotype.ra
  • lines changed 1, context: html, text, full: html, text
    fixed a tag
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra
  • lines changed 3041, context: html, text, full: html, text
    added in first few submissions to release 2
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhHistone.ra
  • lines changed 317, context: html, text, full: html, text
    renamed all ucd to usc expect subid=1831, that needs to be replaced
  • lines changed 279, context: html, text, full: html, text
    added in 1831
  • lines changed 7, context: html, text, full: html, text
    added expid for subid 1831
  • lines changed 193, context: html, text, full: html, text
    added in pbmc control and experiments
  • lines changed 25, context: html, text, full: html, text
    added expId and dcc's to sydh histone
  • lines changed 350, context: html, text, full: html, text
    changed names of k562b's to k562
  • lines changed 7, context: html, text, full: html, text
    corrected some controlId errors
  • lines changed 109, context: html, text, full: html, text
    changed controlId to matching dcc accession
  • lines changed 253, context: html, text, full: html, text
    reverted Usc > Ucd in filename, it was controlId not labId
  • lines changed 301, context: html, text, full: html, text
    forcome some k562b's to k562 last time finished the job
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra
  • lines changed 10, context: html, text, full: html, text
    removed bad dcc accessions
  • lines changed 296, context: html, text, full: html, text
    added origAssembly hg18 where needed
  • lines changed 1229, context: html, text, full: html, text
    added missing expIds and dcc accessions
  • lines changed 33, context: html, text, full: html, text
    added in last 6 submissions
  • lines changed 2597, context: html, text, full: html, text
    changed k562b to k562
  • lines changed 1117, context: html, text, full: html, text
    added in first submissions for release 2
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwDnase.ra
  • lines changed 1170, context: html, text, full: html, text
    added in a whole bunch of uw entries
  • lines changed 285, context: html, text, full: html, text
    cleaned up ExpId's in uwDnase
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwHistone.ra
  • lines changed 2712, context: html, text, full: html, text
    added in a whole bunch of uw entries
  • lines changed 249, context: html, text, full: html, text
    added in missing expid's to uwhistone
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwTfbs.ra
  • lines changed 1816, context: html, text, full: html, text
    added in a whole bunch of uw entries
  • lines changed 169, context: html, text, full: html, text
    added in missing expids and dccaccesions to uw tfbs
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.new.ra
  • lines changed 6784, context: html, text, full: html, text
    made .new.ra's for sydhtfbs and haib tfbs
  • lines changed 896, context: html, text, full: html, text
    added in first few submissions to release 2
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhHistone.new.ra
  • lines changed 62, context: html, text, full: html, text
    renamed all ucd to usc expect subid=1831, that needs to be replaced
  • lines changed 35, context: html, text, full: html, text
    added in 1831
  • lines changed 1, context: html, text, full: html, text
    changed long label to havre usc
  • lines changed 27, context: html, text, full: html, text
    removed B form histones
  • lines changed 28, context: html, text, full: html, text
    removed references to k562
  • lines changed 32, context: html, text, full: html, text
    added in pbmc control and experiments
  • lines changed 18, context: html, text, full: html, text
    changed names of k562b's to k562
  • lines changed 73, context: html, text, full: html, text
    reverted Usc > Ucd in filename, it was controlId not labId
  • lines changed 36, context: html, text, full: html, text
    fixed long labels in sydh histone
  • lines changed 2, context: html, text, full: html, text
    forcome some k562b's to k562 last time finished the job
  • lines changed 15, context: html, text, full: html, text
    fixed short labels
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhNsome.html
  • lines changed 32, context: html, text, full: html, text
    added a blurb about the methods, and added references
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhNsome.ra
  • lines changed 1, context: html, text, full: html, text
    added BYU to the long label
  • lines changed 2, context: html, text, full: html, text
    cleaned up long labels
  • lines changed 4, context: html, text, full: html, text
    corrected nucleosome's long and short labels
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.html
  • lines changed 6, context: html, text, full: html, text
    removed some lines from html
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.new.ra
  • lines changed 5169, context: html, text, full: html, text
    made .new.ra's for sydhtfbs and haib tfbs
  • lines changed 423, context: html, text, full: html, text
    added in first submissions for release 2
• src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.ra
  • lines changed 1, context: html, text, full: html, text
    changed ucd to usc title
  • lines changed 225, context: html, text, full: html, text
    added in last 6 submissions
  • lines changed 1, context: html, text, full: html, text
    corrected a tag error in sydh tfbs
  • lines changed 537, context: html, text, full: html, text
    fixed long labels for sydhtfbs
  • lines changed 608, context: html, text, full: html, text
    changed short labels and made all K562b's k562
  • lines changed 2, context: html, text, full: html, text
    removed an extra space in the views stanzas
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.new.ra
  • lines changed 4, context: html, text, full: html, text
    prepared the UW tracks for the mass loading that i'm doing tomorrow
  • lines changed 325, context: html, text, full: html, text
    added in a whole bunch of uw entries
  • lines changed 21, context: html, text, full: html, text
    cleaned up ExpId's in uwDnase
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUwHistone.new.ra
  • lines changed 227, context: html, text, full: html, text
    prepared the UW tracks for the mass loading that i'm doing tomorrow
  • lines changed 612, context: html, text, full: html, text
    added in a whole bunch of uw entries
• src/hg/makeDb/trackDb/human/hg19/wgEncodeUwTfbs.new.ra
  • lines changed 1, context: html, text, full: html, text
    prepared the UW tracks for the mass loading that i'm doing tomorrow
  • lines changed 391, context: html, text, full: html, text
    added in a whole bunch of uw entries