Commits for wong

v253_base to v254_preview (2011-06-28 to 2011-07-05) v254

• removed bad dcc accessions
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 10, context: html, text, full: html, text
• prepared the UW tracks for the mass loading that i'm doing tomorrow
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.new.ra - lines changed 4, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwHistone.new.ra - lines changed 227, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwTfbs.new.ra - lines changed 1, context: html, text, full: html, text
• added origAssembly hg18 where needed
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 296, context: html, text, full: html, text
• renamed all ucd to usc expect subid=1831, that needs to be replaced
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhHistone.ra - lines changed 317, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhHistone.new.ra - lines changed 62, context: html, text, full: html, text
• added in 1831
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhHistone.ra - lines changed 279, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhHistone.new.ra - lines changed 35, context: html, text, full: html, text
• added expid for subid 1831
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhHistone.ra - lines changed 7, context: html, text, full: html, text
• changed long label to havre usc
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhHistone.new.ra - lines changed 1, context: html, text, full: html, text
• removed B form histones
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhHistone.new.ra - lines changed 27, context: html, text, full: html, text
• changed ucd to usc title
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.ra - lines changed 1, context: html, text, full: html, text
• removed some lines from html
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.html - lines changed 6, context: html, text, full: html, text
• removed references to k562
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhHistone.new.ra - lines changed 28, context: html, text, full: html, text
• added in pbmc control and experiments
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhHistone.ra - lines changed 193, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhHistone.new.ra - lines changed 32, context: html, text, full: html, text
• added BYU to the long label
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhNsome.ra - lines changed 1, context: html, text, full: html, text
• cleaned up long labels
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhNsome.ra - lines changed 2, context: html, text, full: html, text
• added expId and dcc's to sydh histone
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhHistone.ra - lines changed 25, context: html, text, full: html, text
• Sydh Nucleosome release1 notes added
  • src/hg/makeDb/doc/encodeDccHg19/wgEncodeSydhNsome.release1.notes - lines changed 186, context: html, text, full: html, text
• added in a whole bunch of uw entries
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwDnase.ra - lines changed 1170, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwHistone.ra - lines changed 2712, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwTfbs.ra - lines changed 1816, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.new.ra - lines changed 325, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwHistone.new.ra - lines changed 612, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwTfbs.new.ra - lines changed 391, context: html, text, full: html, text
• added missing expIds and dcc accessions
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 1229, context: html, text, full: html, text
• changed names of k562b's to k562
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhHistone.ra - lines changed 350, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhHistone.new.ra - lines changed 18, context: html, text, full: html, text
• corrected some controlId errors
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhHistone.ra - lines changed 7, context: html, text, full: html, text
• changed controlId to matching dcc accession
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhHistone.ra - lines changed 109, context: html, text, full: html, text
• corrected gata3 sc269's tag
  • src/hg/makeDb/trackDb/cv/alpha/cv.ra - lines changed 1, context: html, text, full: html, text
• reverted Usc > Ucd in filename, it was controlId not labId
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhHistone.ra - lines changed 253, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhHistone.new.ra - lines changed 73, context: html, text, full: html, text
• added in last 6 submissions
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 33, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.ra - lines changed 225, context: html, text, full: html, text
• corrected a tag error in sydh tfbs
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.ra - lines changed 1, context: html, text, full: html, text
• cleaned up ExpId's in uwDnase
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwDnase.ra - lines changed 285, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeUwDnase.new.ra - lines changed 21, context: html, text, full: html, text
• added in missing expid's to uwhistone
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwHistone.ra - lines changed 249, context: html, text, full: html, text
• added in missing expids and dccaccesions to uw tfbs
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeUwTfbs.ra - lines changed 169, context: html, text, full: html, text
• fixed long labels for sydhtfbs
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.ra - lines changed 537, context: html, text, full: html, text
• fixed long labels in sydh histone
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhHistone.new.ra - lines changed 36, context: html, text, full: html, text
• fixed a tag
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibGenotype.ra - lines changed 1, context: html, text, full: html, text
• forcome some k562b's to k562 last time finished the job
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhHistone.ra - lines changed 301, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhHistone.new.ra - lines changed 2, context: html, text, full: html, text
• added a blurb about the methods, and added references
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhNsome.html - lines changed 32, context: html, text, full: html, text
• error in generating the notes files, regenerated
  • src/hg/makeDb/doc/encodeDccHg19/wgEncodeSydhNsome.release1.notes - lines changed 192, context: html, text, full: html, text
• repaired orig assembly where needed
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeCaltechRnaSeq.ra - lines changed 243, context: html, text, full: html, text
• changed short labels and made all K562b's k562
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.ra - lines changed 608, context: html, text, full: html, text
• fixed short labels
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhHistone.new.ra - lines changed 15, context: html, text, full: html, text
• made .new.ra's for sydhtfbs and haib tfbs
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.new.ra - lines changed 6784, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.new.ra - lines changed 5169, context: html, text, full: html, text
• changed k562b to k562
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 2597, context: html, text, full: html, text
• added in first few submissions to release 2
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra - lines changed 3041, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.new.ra - lines changed 896, context: html, text, full: html, text
• removed an extra space in the views stanzas
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.ra - lines changed 2, context: html, text, full: html, text
• added in first submissions for release 2
  • src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeSydhTfbs.ra - lines changed 1117, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhTfbs.new.ra - lines changed 423, context: html, text, full: html, text
• corrected nucleosome's long and short labels
  • src/hg/makeDb/trackDb/human/hg19/wgEncodeSydhNsome.ra - lines changed 4, context: html, text, full: html, text