File Changes for vsmalladi

v254_preview to v254_preview2 (2011-07-05 to 2011-07-12) v254

• src/hg/encode/DAFs/2.0/uwMm9RnaSeq.daf
  • lines changed 3, context: html, text, full: html, text
    Updated the Views for to match cv.ra
• src/hg/makeDb/doc/encodeDccHg18/wgEncodeHudsonalphaChipSeq.release3.notes
  • lines changed 768, context: html, text, full: html, text
    Added notes file for release of track for third time. Redmine #825.
  • lines changed 5, context: html, text, full: html, text
    Removed replicate 2 of lab=HudsonAlpha dataType=ChipSeq cell=K562 antibody=Input treatment=None protocol=PCR2x, as this is not linked as a control for any experiment. Redmine #70, note 29 and Redmine #825, note 20. This was forgotten in commit edcf0a7a003f2e14a299793df2fedd55d70932b0.
  • lines changed 45, context: html, text, full: html, text
    Added Deprecated Tables that are Signals.
• src/hg/makeDb/doc/encodeDccHg19/wgEncodeHaibTfbs.release1.notes
  • lines changed 1680, context: html, text, full: html, text
    Updated release notes to accuratley reflect files only for release 1.
• src/hg/makeDb/doc/encodeDccMm9/wgEncodeSydhTfbs.release2.notes
  • lines changed 393, context: html, text, full: html, text
    Updated release notes to refelect the correct number of dropped gbdb files and deprecated tables.
• src/hg/makeDb/trackDb/cv/alpha/cv.ra
  • lines changed 5, context: html, text, full: html, text
    Preliminary defnition for new control RevXLinkChromatin.
  • lines changed 1, context: html, text, full: html, text
    Added new definition for RevXlinkChromatin provided by Flo and Preti. Redmine #4527.
  • lines changed 12, context: html, text, full: html, text
    Added 2 extra views that are on a Mouse track. Redmine #3608.
• src/hg/makeDb/trackDb/human/hg18/metaDb/alpha/wgEncodeHudsonalphaChipSeq.ra
  • lines changed 91, context: html, text, full: html, text
    Updated antibody=Input to antibody=RevXlinkChromatin. Also update the subGroups to remove any control's in antibody and only have zRXLCH. Redmine #4527.
  • lines changed 48, context: html, text, full: html, text
    Removed replicate 2 of lab=HudsonAlpha dataType=ChipSeq cell=K562 antibody=Input treatment=None protocol=PCR2x, as this is not linked as a control for any experiment. Redmine #70, note 29 and Redmine #825, note 20. This was forgotten in commit edcf0a7a003f2e14a299793df2fedd55d70932b0.
  • lines changed 715, context: html, text, full: html, text
    Added expId's and dccAccessions. Redmine #825, note 25.
  • lines changed 715, context: html, text, full: html, text
    Removed dccAccessions added by mistake in commit ea5881c6f148e2a4bfafc533a63d6240a3ef330e. Redmine #825, note 25.
• src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaChipSeq.new.html
  • lines changed 191, context: html, text, full: html, text
    Added new html file to explain the change of antibody=Input to RevXlinkChromatin. Redmine #4527, #825.
• src/hg/makeDb/trackDb/human/hg18/wgEncodeHudsonalphaChipSeq.new.ra
  • lines changed 29, context: html, text, full: html, text
    Updated antibody=Input to antibody=RevXlinkChromatin. Also update the subGroups to remove any control's in antibody and only have zRXLCH. Redmine #4527.
  • lines changed 1, context: html, text, full: html, text
    Added new html file to explain the change of antibody=Input to RevXlinkChromatin. Redmine #4527, #825.
  • lines changed 8, context: html, text, full: html, text
    Removed replicate 2 of lab=HudsonAlpha dataType=ChipSeq cell=K562 antibody=Input treatment=None protocol=PCR2x, as this is not linked as a control for any experiment. Redmine #70, note 29 and Redmine #825, note 20. This was forgotten in commit edcf0a7a003f2e14a299793df2fedd55d70932b0.
• src/hg/makeDb/trackDb/human/hg19/metaDb/alpha/wgEncodeHaibTfbs.ra
  • lines changed 7327, context: html, text, full: html, text
    Updated antibody=Input to antibody=RevXlinkChromatin. Also update the subGroups to remove any control's in antibody and only have zRXLCH. Renamed files that used Control to Rxlch in file name. Updated name changes to .new.ra for release 2 updates. Redmine #4527
  • lines changed 154, context: html, text, full: html, text
    Error: Last commit didn't include the following. Updated antibody=Input to antibody=RevXlinkChromatin. Redmine #4527.
  • lines changed 2, context: html, text, full: html, text
    Fixed invalide date 2008-12-117 to 2008-12-11. Redmine #4393. Note 55.
  • lines changed 7, context: html, text, full: html, text
    Added dccAccession and expId's for release 1. Redmine #70 note 35.
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.new.ra
  • lines changed 155, context: html, text, full: html, text
    Updated antibody=Input to antibody=RevXlinkChromatin. Also update the subGroups to remove any control's in antibody and only have zRXLCH. Renamed files that used Control to Rxlch in file name. Updated name changes to .new.ra for release 2 updates. Redmine #4527
• src/hg/makeDb/trackDb/human/hg19/wgEncodeHaibTfbs.ra
  • lines changed 155, context: html, text, full: html, text
    Updated antibody=Input to antibody=RevXlinkChromatin. Also update the subGroups to remove any control's in antibody and only have zRXLCH. Renamed files that used Control to Rxlch in file name. Updated name changes to .new.ra for release 2 updates. Redmine #4527
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodePsuTfbs.ra
  • lines changed 3, context: html, text, full: html, text
    Updated spelling of train to strain in metaDb.
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeSydhHistone.ra
  • lines changed 55, context: html, text, full: html, text
    Added expId's and dccAccession's.
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeSydhRnaSeq.ra
  • lines changed 13, context: html, text, full: html, text
    Added age and strain information that were missing for the MEL cell line.
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeSydhTfbs.ra
  • lines changed 517, context: html, text, full: html, text
    Added dccAccession and expId's.
• src/hg/makeDb/trackDb/mouse/mm9/metaDb/alpha/wgEncodeUwRnaSeq.ra
  • lines changed 47, context: html, text, full: html, text
    Updated the Views for to match cv.ra
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodeSydhHistone.ra
  • lines changed 11, context: html, text, full: html, text
    Updated Long labels to all be under 80 characters.
  • lines changed 18, context: html, text, full: html, text
    Fixed long and short labels on the recomendation of Kate. Redmine #97. Note 17.
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodeSydhTfbs.new.html
  • lines changed 171, context: html, text, full: html, text
    Added new html for relese 2 that descirbes resubmitted data and newly added data.
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodeSydhTfbs.newR2.ra
  • lines changed 5, context: html, text, full: html, text
    Added more descriptive long label for the second p300 antibody.
  • lines changed 1, context: html, text, full: html, text
    Added new html for relese 2 that descirbes resubmitted data and newly added data.
• src/hg/makeDb/trackDb/mouse/mm9/wgEncodeUwRnaSeq.ra
  • lines changed 49, context: html, text, full: html, text
    Updated the Views for to match cv.ra